Showing : spillover • reset
2
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12
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Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array extent
flowcore spillover
updated 6.4 years ago by ★ 1.3k • written 6.4 years ago by ▴ 20
0
votes
6
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2.1k
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spillover::flowCore problem: Error in match(unstained, sampleNames(x))
flowcore spillover flowcytometry
updated 6.2 years ago by • 0 • written 8.2 years ago by • 0
2
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3
replies
1.7k
views
how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 4.9 years ago by ▴ 310 • written 4.9 years ago by • 0
3
votes
2
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1.7k
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How are autofluorescence values used in the spillover/compensate functions?
flowcore flow cytometry compensation spillover
updated 9.1 years ago by ▴ 150 • written 9.1 years ago by ▴ 20
0
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3
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1.6k
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Spillover matrix in FlowCore doesn't match Compensation Matrix from FlowJo
spillover flowcore compensation matrix bioconductor flow cytometry
6.2 years ago Samuel Ahuno • 0
1
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2
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Error: Unable to match stains with controls based on intensity: a single stain matches to several multiple controls. - Spillover-flowcore
spillover compensation flowcore
8.0 years ago • updated 7.8 years ago davide.franchina ▴ 10
1
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3
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1.3k
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Please help me verify my compensation and spill matrices makes sense ( openCyto package, in flowCore )
flow cytometry flowcore spillover compensation matrix
updated 6.5 years ago by ▴ 350 • written 6.5 years ago by ▴ 20
0
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1
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975
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spillover::flowCore problem: Error: Unable to match stains with controls based on intensity: a single stain matches to several multiple controls.
flowCore spillover compensation matrix bioconductor flow cytometry
6.2 years ago Samuel Ahuno • 0
0
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0
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744
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Error with spillover function
spillover
6.8 years ago justinyi10 ▴ 10
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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