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Is it appropriate to apply linear mixed models to Voom transformed data?
stats
r
RNASeqData
limma
voom
5 months ago
pl23
• 0
3
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4
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2.1k
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R session aborted: prcomp
Biobase
stats
updated 3.1 years ago by
Kevin Blighe
★ 3.9k • written 3.1 years ago by
Gero
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0
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Job:
Two Post-doctoral Positions at University of Campinas
post-doc
job
stats
computational biology
Job
7.7 years ago • updated 7.6 years ago
Benilton Carvalho
★ 4.3k
0
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0
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1.4k
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Job:
Data Scientist / Bioinformatician / Statistician at University of California
R
python
stats
bioinformatics
perl
Job
7.7 years ago
clif.duhn
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5
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6
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1.4k
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getting a matrix with diagonal =1
stats
updated 8.3 years ago by
Aaron Lun
★ 28k • written 8.3 years ago by
Angel
▴ 40
3
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3
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2.2k
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ribosome profiling analysis with different dispersions
deseq2
linear model
ribosome profiling
stats
updated 8.7 years ago by
Ryan C. Thompson
★ 7.9k • written 8.7 years ago by
Jake
▴ 90
2
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2
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2.2k
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Memory management in R
stats
updated 9.1 years ago by
Martin Morgan
25k • written 9.1 years ago by
mrk.carty
▴ 30
2
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5
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1.6k
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Download the stats of Bioconductor
bioconductor
stats
9.3 years ago
Lluís Revilla Sancho
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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