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1.4k

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R subset DifferentialExpression

updated 3.1 years ago by Basti ▴ 780 • written 3.1 years ago by Manav • 0

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2.0k

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VariantAnnotation subset ScanVcfParam

updated 5.5 years ago by Martin Morgan 25k • written 5.5 years ago by Dario Strbenac ★ 1.6k

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2.8k

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TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

6.5 years ago Ruichao.Zeng ▴ 20

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1.4k

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flowStats newbie split subset flowCore

7.2 years ago yulia.chupalova • 0

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2.7k

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deseq2 maplot subset

updated 7.8 years ago by Michael Love 43k • written 7.8 years ago by rbronste ▴ 60

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3.2k

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probe filter subset gene symbol affy

10.7 years ago alakatos ▴ 130

6 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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