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How to subset a list of genes from a curated reference list of genes
R
subset
DifferentialExpression
updated 3.0 years ago by
Basti
▴ 780 • written 3.0 years ago by
Manav
• 0
3
votes
2
replies
2.0k
views
Import or Subset VCF PASS Variants
VariantAnnotation
subset
ScanVcfParam
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
Dario Strbenac
★ 1.6k
2
votes
5
replies
2.8k
views
How to construct a subset of TxDb object from TxDb.Hsapiens.UCSC.hg38.knownGene and selected genes
TxDb.Hsapiens.UCSC.hg38.knownGene
subset
TxDb object
6.5 years ago
Ruichao.Zeng
▴ 20
1
vote
2
replies
1.4k
views
Newbie question: how do I address a subset obtained by split()?
flowStats
newbie
split
subset
flowCore
7.1 years ago
yulia.chupalova
• 0
2
votes
1
reply
2.7k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 7.8 years ago by
Michael Love
43k • written 7.8 years ago by
rbronste
▴ 60
0
votes
3
replies
3.2k
views
filtering out probes with no gene symbol from expressionSet
probe
filter
subset
gene symbol
affy
10.7 years ago
alakatos
▴ 130
6 results • Page
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Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…
Comment: DESeq2 interactions
by
Michael Love
43k
GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …
Answer: Important: Bioconductor Release 3.22 Delayed
by
shepherl
4.2k
We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you
Votes
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
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