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1.2k

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R subset DifferentialExpression

updated 2.3 years ago by Basti ▴ 780 • written 2.3 years ago by Manav • 0

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1.7k

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VariantAnnotation subset ScanVcfParam

updated 4.8 years ago by Martin Morgan 25k • written 4.8 years ago by Dario Strbenac ★ 1.5k

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2.5k

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TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

5.7 years ago Ruichao.Zeng ▴ 20

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1.2k

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flowStats newbie split subset flowCore

6.4 years ago yulia.chupalova • 0

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2.4k

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deseq2 maplot subset

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by rbronste ▴ 60

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3.0k

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probe filter subset gene symbol affy

9.9 years ago alakatos ▴ 130

6 results • Page 1 of 1

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Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…

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Comment: can't install tscR

Answer: Csaw normalization strategies - general inquiry

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

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