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subset
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How to subset a list of genes from a curated reference list of genes
R
subset
DifferentialExpression
updated 3.0 years ago by
Basti
▴ 780 • written 3.0 years ago by
Manav
• 0
3
votes
2
replies
1.9k
views
Import or Subset VCF PASS Variants
VariantAnnotation
subset
ScanVcfParam
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
Dario Strbenac
★ 1.6k
2
votes
5
replies
2.8k
views
How to construct a subset of TxDb object from TxDb.Hsapiens.UCSC.hg38.knownGene and selected genes
TxDb.Hsapiens.UCSC.hg38.knownGene
subset
TxDb object
6.4 years ago
Ruichao.Zeng
▴ 20
1
vote
2
replies
1.4k
views
Newbie question: how do I address a subset obtained by split()?
flowStats
newbie
split
subset
flowCore
7.1 years ago
yulia.chupalova
• 0
2
votes
1
reply
2.7k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 7.7 years ago by
Michael Love
43k • written 7.7 years ago by
rbronste
▴ 60
0
votes
3
replies
3.2k
views
filtering out probes with no gene symbol from expressionSet
probe
filter
subset
gene symbol
affy
10.6 years ago
alakatos
▴ 130
6 results • Page
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Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 4.9k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 4.9k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Comment: R course in Boston December 19-20
by
eja.gaasa2e.r.m
• 0
The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
Answer: Gatins Set error
by
James W. MacDonald
68k
`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
Answer: How to model DE for RNA-seq in concordant monozygotic twins?
by
Gordon Smyth
53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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