Bioconductor Subset

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1.4k

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R subset DifferentialExpression

updated 3.2 years ago by Basti ▴ 780 • written 3.2 years ago by Manav • 0

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2.0k

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VariantAnnotation subset ScanVcfParam

updated 5.7 years ago by Martin Morgan 25k • written 5.7 years ago by Dario Strbenac ★ 1.6k

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2.9k

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TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

6.6 years ago Ruichao.Zeng ▴ 20

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1.5k

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flowStats newbie split subset flowCore

7.3 years ago yulia.chupalova • 0

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2.7k

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deseq2 maplot subset

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by rbronste ▴ 60

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3.3k

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probe filter subset gene symbol affy

10.8 years ago alakatos ▴ 130

6 results • Page 1 of 1

Recent ...

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Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k

Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. We will …

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0

Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…

Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Istvan Albert ▴ 50

Popular Question to Dario Strbenac ★ 1.6k

Scholar to Nikos Ignatiadis ▴ 180