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GDCdow tcgabiolinks error tcgadownload download_error

updated 6.1 years ago by Tiago Chedraoui Silva ▴ 260 • written 6.1 years ago by miki716 • 0

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tcgadownload deseq2 mirna normalization

updated 6.6 years ago by Lorena Pantano ▴ 140 • written 6.6 years ago by Björn • 0

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R tcgabiolinks tcgadownload error

7.6 years ago juniuskcc • 0

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 7.9 years ago by Tiago Chedraoui Silva ▴ 260 • written 8.0 years ago by enigmargs • 0

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tcgabiolinks tcgadownload

updated 8.3 years ago by Tiago Chedraoui Silva ▴ 260 • written 8.3 years ago by Leonardo Collado Torres ★ 1.1k

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tcgabiolinks tcgadownload

updated 3.7 years ago by H. Z. Amini ▴ 10 • written 8.5 years ago by sabarinath.chandrasekharan ▴ 10

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tcgabiolinks TCGAdownload

updated 8.6 years ago by Tiago C. Silva ▴ 270 • written 8.6 years ago by roladali ▴ 20

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tcgadownload

8.6 years ago maedakus ▴ 10

8 results • Page 1 of 1

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Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k