Bioconductor TFBSTools

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509

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TFBSTools R forloop

updated 22 months ago by onlineclasshelpnow • 0 • written 22 months ago by HELEN • 0

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replies

445

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TFBSTools FASTA RStudio

22 months ago HELEN • 0

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540

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TFBSTools DNASeqData readFASTA DNA RStudio

updated 22 months ago by James W. MacDonald 63k • written 22 months ago by HELEN • 0

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586

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error TFBSTools R

23 months ago • updated 22 months ago HELEN • 0

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465

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TFBSTools RStudio R

23 months ago HELEN • 0

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2.0k

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pwm tfbstools jaspar

updated 6.0 years ago by Ge Tan ▴ 20 • written 6.0 years ago by chrisclarkson100 ▴ 50

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1.5k

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TFBSTools looping PFMatrixList PFMatrix bioconductor

6.4 years ago nathan.lawlor03 • 0

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865

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bioconductor tfbstools

updated 6.9 years ago by Ge Tan ▴ 20 • written 6.9 years ago by laurabuggiotti • 0

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1.1k

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tfbstools jaspar

updated 7.9 years ago by Ge Tan ▴ 20 • written 8.0 years ago by JasonLouisStein • 0

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1.2k

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tfbstools

updated 8.3 years ago by Ge Tan ▴ 20 • written 8.5 years ago by franceskrussell • 0

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Answer: ukb Chromosomal position information was converted into SNPS by James W. MacDonald 63k

In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…

Comment: T.fit function of maSigPro returns error message by hanna.g • 0

Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …

Answer: Deseq2, enrichGO and ensembl ID by James W. MacDonald 63k

1. There isn't a keytype alternative. You need the gene IDs. 2. Convert the `rownames` of your 'se' object, or the `rownames` of your `D…

Comment: Doubts regarding Pathview by loyedbend2811 • 0

I thoroughly enjoyed reading your essay, and it was quite beneficial to me. Please join me in [monopoly online][1] if you have the time. …

Comment: ukb Chromosomal position information was converted into SNPS by wenbo • 0

Hi, I downloaded uk biobank data, but I don't know how to use R to convert chromosome position information to rs

Votes

Answer: MDS plot edgeR

A: legend with gradient in ComplexHeatmap

Comment: comparing contrasts in edger/lima using makeContrasts function

Answer: comparing contrasts in edger/lima using makeContrasts function

Answer: Differential expression analysis with only FPKM matrix available from total newb

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