Showing : time-series • reset
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6
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Time-series RNA-seq analysis using DESeq2
time-series DESeq2 RNASeq timecoursedata TimeCourse
updated 16 months ago by ★ 4.6k • written 16 months ago by • 0
0
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1
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815
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Interpreting results from DESeq2 time-series multifactorial data analysis
DESeq2 time-series timecoursedata timecourse multifactorial
updated 2.1 years ago by 43k • written 2.2 years ago by • 0
0
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2
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1.0k
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R: problem with running time-series analysis software: Mfuzz
time-series mfuzz replace=FALSE
2.6 years ago soda ▴ 80
0
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1
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988
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DEseq2 to test half-life for time-series data
half-life DESeq2 time-series
updated 3.7 years ago by 43k • written 3.7 years ago by ▴ 10
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5
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2.2k
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RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
5.5 years ago mah19 • 0
2
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10
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3.2k
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Time-series analysis with DESeq2
deseq2 time-series design matrix edger
updated 5.9 years ago by 43k • written 5.9 years ago by ★ 1.5k
0
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3
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1.2k
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time-series, no replicates, no control groupe
deseq2 time-series without replicate
updated 6.5 years ago by 43k • written 6.5 years ago by • 0
1
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4
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1.5k
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Analysis Time course data using DESeq2
deseq2 timecourse multiple time points time-series
updated 6.5 years ago by 43k • written 6.5 years ago by • 0
1
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5
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1.7k
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Time course DE analysis in DESeq2 with Wald test
DESeq2 time-series
updated 7.2 years ago by 43k • written 7.2 years ago by ▴ 10
9 results • Page 1 of 1
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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