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3-factor DESeq2 trime-series analysis
time-series DESeq2
updated 4 weeks ago by ★ 4.0k • written 3 months ago by • 0
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6
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Time-series RNA-seq analysis using DESeq2
time-series DESeq2 RNASeq timecoursedata TimeCourse
updated 2.3 years ago by ★ 5.0k • written 2.3 years ago by • 0
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1
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1.2k
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Interpreting results from DESeq2 time-series multifactorial data analysis
DESeq2 time-series timecoursedata timecourse multifactorial
updated 3.1 years ago by 43k • written 3.1 years ago by • 0
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2
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1.4k
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R: problem with running time-series analysis software: Mfuzz
time-series mfuzz replace=FALSE
3.6 years ago soda ▴ 80
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1
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1.2k
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DEseq2 to test half-life for time-series data
half-life DESeq2 time-series
updated 4.7 years ago by 43k • written 4.7 years ago by ▴ 10
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5
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2.7k
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RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
6.4 years ago mah19 • 0
2
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10
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4.1k
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Time-series analysis with DESeq2
deseq2 time-series design matrix edger
updated 6.8 years ago by 43k • written 6.8 years ago by ★ 1.5k
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3
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time-series, no replicates, no control groupe
deseq2 time-series without replicate
updated 7.4 years ago by 43k • written 7.4 years ago by • 0
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4
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Analysis Time course data using DESeq2
deseq2 timecourse multiple time points time-series
updated 7.4 years ago by 43k • written 7.4 years ago by • 0
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5
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Time course DE analysis in DESeq2 with Wald test
DESeq2 time-series
updated 8.2 years ago by 43k • written 8.2 years ago by ▴ 10
10 results • Page 1 of 1
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Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. We will …
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0
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Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k
The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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