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uniprot
•
reset
2
votes
5
replies
6.1k
views
UniprotKB AC/ID to Entrez ID Conversion
ID
Uniprot
EntrezID
3.7 years ago
tom.kloter
• 0
3
votes
11
replies
8.1k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler
AnnotationHub
GO
uniprot
updated 23 months ago by
Guido Hooiveld
★ 4.1k • written 5.0 years ago by
Alberto
• 0
1
vote
1
reply
1.8k
views
UniProt.ws - Speeding up select() for data retrieval
UniProt.ws
UniProt
updated 5.2 years ago by
James W. MacDonald
68k • written 5.2 years ago by
JavierM
• 0
2
votes
3
replies
1.7k
views
Uniprot and UniProt.ws
Uniprot
Annotation
Identifiers
6.7 years ago
Juliet Hannah
▴ 360
4
votes
2
replies
1.4k
views
drawProteins from Uniprot entry (missing chain information)
drawProteins
uniprot
updated 7.0 years ago by
James W. MacDonald
68k • written 7.0 years ago by
mblango
• 0
1
vote
4
replies
1.9k
views
UniProt.ws non-functional or abandoned?
uniprot.ws
uniprot
uniprot accessions
updated 7.2 years ago by
James W. MacDonald
68k • written 7.2 years ago by
balin
• 0
0
votes
2
replies
1.6k
views
Error retrieving data with biomaRt
biomart
r
getbm
uniprot
7.9 years ago
lluex.rova
• 0
0
votes
1
reply
1.7k
views
UniProt.ws - single database for two species
uniprot.ws
uniprot
updated 8.2 years ago by
James W. MacDonald
68k • written 8.2 years ago by
l.nilse
• 0
0
votes
1
reply
2.4k
views
org.Mm.eg.db UNIPROT missing values
Annotation
mouse
UNIPROT
updated 8.3 years ago by
Mike Smith
★ 6.6k • written 8.3 years ago by
julie.chevalier
• 0
1
vote
7
replies
2.8k
views
UniProt.ws report 1:many mappings in a single row
uniprot.ws
UniProt
annotation
9.2 years ago
l.nilse
• 0
0
votes
3
replies
1.6k
views
Accessing feature data of a Malus domestica Nimblegen microarray
nimblegen
Biomart
Uniprot
updated 9.2 years ago by
Gordon Smyth
53k • written 9.2 years ago by
theobroma22
▴ 10
4
votes
1
reply
2.2k
views
Converting Protein Accessions Into Protein Symbols
uniprot
uniprot.ws
9.9 years ago
Dario Strbenac
★ 1.6k
2
votes
4
replies
4.1k
views
UniProt.ws version 2.10.2
uniprot.ws
subcellular location
uniprot
9.9 years ago
DHS
• 0
0
votes
3
replies
1.9k
views
Anotations Score of uniprot. ws
uniprot.ws
uniprot
updated 10.2 years ago by
James W. MacDonald
68k • written 10.2 years ago by
cerikahp
• 0
2
votes
2
replies
1.8k
views
Is there a package that has Uniprot protein descriptions?
uniprot.ws
uniprot
uniprot accessions
software error
updated 10.2 years ago by
James W. MacDonald
68k • written 10.2 years ago by
john
▴ 10
2
votes
14
replies
4.9k
views
Unimart not available in 2015?
biomart
uniprot
unimart
10.2 years ago
john
▴ 10
1
vote
4
replies
5.6k
views
problem with retrieving UniProt annotation data
uniprot.ws
uniprot
updated 10.9 years ago by
Marc Carlson
★ 7.2k • written 10.9 years ago by
Guido Hooiveld
★ 4.1k
0
votes
6
replies
3.1k
views
converting UniProt to SGD ids using UniProt.wd
uniprot.ws
uniprot
ensembl
updated 11.0 years ago by
Marc Carlson
★ 7.2k • written 11.0 years ago by
Joseph Barry
▴ 160
0
votes
2
replies
2.1k
views
Missing ensembl_ids in biomaRt uniprot query
biomaRt
uniprot
ensembl
updated 11.1 years ago by
me
• 0 • written 11.1 years ago by
António Miguel de Jesus Domingues
▴ 510
19 results • Page
1 of 1
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Replies
Comment: Combining two proteomics datasets with limpa
by
Andrew Pattison
• 0
Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
Flagging protein groups as likely contaminants in this way will be fine for a limpa analysis. The `Cont_` proteins can optionally stay in f…
Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Gordon Smyth
53k
Aaron Lun was a PhD student in my Lab back in 2015, when he posted the answers about allele-specific expression that you and Mike Love have…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Michael Love
43k
You just need the mouse identifier (controls baseline) and the group specific allelic effect.
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Julia Broadbent
• 0
Hi Emily, Just sharing a resource for handling contaminants - we use the methods described in [Frankenfield et al. (2022)](https://pubs.acs…
Votes
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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