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uniprot
•
reset
2
votes
5
replies
5.5k
views
UniprotKB AC/ID to Entrez ID Conversion
ID
Uniprot
EntrezID
3.4 years ago
tom.kloter
• 0
3
votes
11
replies
7.5k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler
AnnotationHub
GO
uniprot
updated 20 months ago by
Guido Hooiveld
★ 4.1k • written 4.7 years ago by
Alberto
• 0
1
vote
1
reply
1.6k
views
UniProt.ws - Speeding up select() for data retrieval
UniProt.ws
UniProt
updated 4.9 years ago by
James W. MacDonald
68k • written 4.9 years ago by
JavierM
• 0
2
votes
3
replies
1.6k
views
Uniprot and UniProt.ws
Uniprot
Annotation
Identifiers
6.5 years ago
Juliet Hannah
▴ 360
4
votes
2
replies
1.3k
views
drawProteins from Uniprot entry (missing chain information)
drawProteins
uniprot
updated 6.7 years ago by
James W. MacDonald
68k • written 6.7 years ago by
mblango
• 0
1
vote
4
replies
1.7k
views
UniProt.ws non-functional or abandoned?
uniprot.ws
uniprot
uniprot accessions
updated 7.0 years ago by
James W. MacDonald
68k • written 7.0 years ago by
balin
• 0
0
votes
2
replies
1.5k
views
Error retrieving data with biomaRt
biomart
r
getbm
uniprot
7.7 years ago
lluex.rova
• 0
0
votes
1
reply
1.6k
views
UniProt.ws - single database for two species
uniprot.ws
uniprot
updated 8.0 years ago by
James W. MacDonald
68k • written 8.0 years ago by
l.nilse
• 0
0
votes
1
reply
2.3k
views
org.Mm.eg.db UNIPROT missing values
Annotation
mouse
UNIPROT
updated 8.1 years ago by
Mike Smith
★ 6.6k • written 8.1 years ago by
julie.chevalier
• 0
1
vote
7
replies
2.7k
views
UniProt.ws report 1:many mappings in a single row
uniprot.ws
UniProt
annotation
8.9 years ago
l.nilse
• 0
0
votes
3
replies
1.5k
views
Accessing feature data of a Malus domestica Nimblegen microarray
nimblegen
Biomart
Uniprot
updated 8.9 years ago by
Gordon Smyth
53k • written 8.9 years ago by
theobroma22
▴ 10
4
votes
1
reply
2.1k
views
Converting Protein Accessions Into Protein Symbols
uniprot
uniprot.ws
9.7 years ago • updated 9.6 years ago
Dario Strbenac
★ 1.6k
2
votes
4
replies
3.8k
views
UniProt.ws version 2.10.2
uniprot.ws
subcellular location
uniprot
9.7 years ago
DHS
• 0
0
votes
3
replies
1.8k
views
Anotations Score of uniprot. ws
uniprot.ws
uniprot
updated 9.9 years ago by
James W. MacDonald
68k • written 9.9 years ago by
cerikahp
• 0
2
votes
2
replies
1.7k
views
Is there a package that has Uniprot protein descriptions?
uniprot.ws
uniprot
uniprot accessions
software error
updated 9.9 years ago by
James W. MacDonald
68k • written 9.9 years ago by
john
▴ 10
2
votes
14
replies
4.7k
views
Unimart not available in 2015?
biomart
uniprot
unimart
9.9 years ago
john
▴ 10
1
vote
4
replies
5.3k
views
problem with retrieving UniProt annotation data
uniprot.ws
uniprot
updated 10.7 years ago by
Marc Carlson
★ 7.2k • written 10.7 years ago by
Guido Hooiveld
★ 4.1k
0
votes
6
replies
3.0k
views
converting UniProt to SGD ids using UniProt.wd
uniprot.ws
uniprot
ensembl
updated 10.8 years ago by
Marc Carlson
★ 7.2k • written 10.8 years ago by
Joseph Barry
▴ 160
0
votes
2
replies
2.0k
views
Missing ensembl_ids in biomaRt uniprot query
biomaRt
uniprot
ensembl
updated 10.9 years ago by
me
• 0 • written 10.9 years ago by
António Miguel de Jesus Domingues
▴ 510
19 results • Page
1 of 1
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Replies
Answer: Using DESeq2 for age prediction
by
ATpoint
★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis
by
piffelpaff
▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis
by
Michael Love
43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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