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mouse
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TFutils database
TFutils
mouse
gene
convert
3.5 years ago
nicocillari
• 0
3
votes
4
replies
1.8k
views
AnnotationData package for Affymetrix HT MG-430 PM Array Plate
RNAseq
Affymetrix
Mouse
updated 4.2 years ago by
Guido Hooiveld
★ 4.1k • written 4.2 years ago by
olrema
• 0
1
vote
3
replies
2.6k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub
Ensembl
Mouse
AnnotationHub Ensembl
5.0 years ago
dmgatti
▴ 10
0
votes
3
replies
1.3k
views
Choosing DESeq2 design for mice experiment
deseq2
mouse
rnaseq
7.0 years ago
Emilie
• 0
0
votes
1
reply
1.9k
views
org.Mm.eg.db UNIPROT missing values
Annotation
mouse
UNIPROT
updated 7.2 years ago by
Mike Smith
★ 6.6k • written 7.2 years ago by
julie.chevalier
• 0
6
votes
1
reply
7.1k
views
Finding orthologous human/mouse ENSEMBL IDs
human
mouse
ensembl
annotationdbi
homologue
7.5 years ago
Keith Hughitt
▴ 180
0
votes
1
reply
1.4k
views
Annotation for Mouse Illumina Expression Chip V6.1.1
bead chip
Annotation
Mouse
Lumi
probeID2nuID
updated 8.4 years ago by
Andy Lynch
▴ 120 • written 8.4 years ago by
smt8n
• 0
0
votes
0
replies
1.3k
views
News:
Ensembl release 82 is out!
biomart
ensembl
release82
variation
mouse
News
9.2 years ago
Thomas Maurel
▴ 800
5
votes
2
replies
3.0k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 9.4 years ago by
Sonali Arora
▴ 390 • written 9.4 years ago by
Thomas Maurel
▴ 800
9 results • Page
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Answer: Cannot install GO.db and org.Hs.eg.db
by
James W. MacDonald
67k
You might try tracing the namespace loading. ``` Sys.setenv("_R_TRACE_LOADNAMESPACE_"="2") install("org.Hs.eg.db") ``` And see if th…
Answer: p value is 0, padj is 0
by
James W. MacDonald
67k
It is quite possible for a very small p-value to remain very small after multiplicity adjustment. I don't know the cutoff for `DESeq2` to r…
Answer: Help using rtracklayer for gene ID extraction
by
James W. MacDonald
67k
You don't need `rtracklayer` for this (not directly anyway), but instead you need `txdbmaker` which you can use to make a `TxDb` object tha…
Answer: Feature Counts - potential bug with outfile.jcounts
by
Wei Shi
★ 3.6k
We will further develop the junction quantification module to support the use of user-provided annotation data for annotating detected junc…
Comment: Pre-filtering TPM kallisto for ssGSEA / DESeq2
by
georgii.vdovin
• 0
Thank you!
Votes
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
Answer: Mapping Between GenBank ID's and Uniprot
Comment: What type of counts data to import for performing Isoform analysis in edgeR
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