Bioconductor Mouse

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456

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annotation SingleR mouse SingleCellData scRNAseq

12 months ago Muhammad • 0

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1.0k

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TFutils mouse gene convert

4.7 years ago nicocillari • 0

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2.4k

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RNAseq Affymetrix Mouse

updated 5.3 years ago by Guido Hooiveld ★ 4.1k • written 5.3 years ago by olrema • 0

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AnnotationHub Ensembl Mouse AnnotationHub Ensembl

6.2 years ago dmgatti ▴ 10

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1.8k

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deseq2 mouse rnaseq

8.2 years ago Emilie • 0

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2.4k

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Annotation mouse UNIPROT

updated 8.4 years ago by Mike Smith ★ 6.6k • written 8.4 years ago by julie.chevalier • 0

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10k

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human mouse ensembl annotationdbi homologue

8.7 years ago Keith Hughitt ▴ 180

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1.8k

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bead chip Annotation Mouse Lumi probeID2nuID

updated 9.6 years ago by Andy Lynch ▴ 120 • written 9.6 years ago by smt8n • 0

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1.5k

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biomart ensembl release82 variation mouse News

10.4 years ago Thomas Maurel ▴ 800

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3.8k

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human mouse GRCh38 biomart Ensembl News

updated 10.6 years ago by Sonali Arora ▴ 390 • written 10.6 years ago by Thomas Maurel ▴ 800

10 results • Page 1 of 1

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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

Votes

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Popular Question to Peter Hickey ▴ 760