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variantfiltering
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Variant Filtering on very large VCF files
VariantAnnotation
VariantFiltering
7 months ago
Bogdan
▴ 670
0
votes
1
reply
369
views
VariantFiltering error
VariantFiltering
updated 10 months ago by
Robert Castelo
★ 3.3k • written 10 months ago by
Andrew Beggs
▴ 90
0
votes
1
reply
1.5k
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Confused about understanding the output and statistics of BAM file after STAR aligning
RNAseq123
VariantFiltering
Alignment
VariantAnnotation
updated 18 months ago by
James W. MacDonald
65k • written 18 months ago by
Mohamed
▴ 30
0
votes
3
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1.4k
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library VaraintFiltration looking for explanation of pedigree file
bioconductor
variantfiltering
6.7 years ago
Claus.Hultschig
• 0
3
votes
2
replies
1.4k
views
filtering VCF files
variantannotation
variantfiltering
updated 7.1 years ago by
Michael Lawrence
★ 11k • written 7.1 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.1k
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Problems with autosomalRecessiveHomozygous
VariantFiltering
8.8 years ago
claire.simpson
• 0
4
votes
0
replies
1.5k
views
News:
Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing
transcription
variantfiltering
annotation
News
8.9 years ago
Matthew Ritchie
▴ 1000
1
vote
1
reply
1.3k
views
retrieving phastConsScores via 'scores' from 'VariantFiltering' shows inconsistency
variantfiltering
phastcons
updated 9.0 years ago by
Robert Castelo
★ 3.3k • written 9.0 years ago by
Stefanie Tauber
▴ 40
0
votes
0
replies
1.7k
views
problems installing VariantFiltering package
VariantFiltering
VariantFiltering
10.0 years ago
Robert Castelo
★ 3.3k
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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