Bioconductor Webbioc

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webbioc qvalue webbioc qvalue

updated 16.3 years ago by ALok ▴ 170 • written 16.3 years ago by Amy Johnson ▴ 40

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Preprocessing multtest webbioc Preprocessing multtest webbioc

16.7 years ago Balasubramanian Ganesan ▴ 70

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1.2k

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webbioc webbioc

updated 16.9 years ago by Kasper Daniel Hansen ★ 6.5k • written 16.9 years ago by Ron ▴ 40

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886

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Annotation webbioc Annotation webbioc

17.5 years ago Dave Campbell ▴ 10

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Microarray webbioc Microarray webbioc

17.6 years ago jane janes ▴ 20

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Microarray cdf probe multtest affy webbioc Microarray cdf probe multtest affy webbioc

updated 17.8 years ago by Nianhua Li ▴ 870 • written 17.8 years ago by jane janes ▴ 20

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webbioc webbioc

updated 18.8 years ago by Seth Falcon ★ 7.4k • written 18.8 years ago by Narendra Kaushik ▴ 150

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webbioc webbioc

updated 19.9 years ago by Colin A. Smith ▴ 220 • written 19.9 years ago by Jacob Michaelson ▴ 320

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webbioc webbioc

20.5 years ago Phguardiol@aol.com ▴ 720

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1.6k

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Proteomics Annotation Normalization GO Cancer CGH pamr gcrma gpls affyPLM webbioc bim

updated 20.6 years ago by Wolfgang Huber ★ 13k • written 20.6 years ago by A.J. Rossini ▴ 810

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webbioc cycle webbioc cycle

21.1 years ago Colin A. Smith ▴ 220

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Genetics multtest webbioc Genetics multtest webbioc

21.1 years ago Jose Duarte ▴ 100

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846

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webbioc webbioc

21.1 years ago Colin A. Smith ▴ 220

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webbioc webbioc

21.1 years ago Ron Ophir ▴ 80

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webbioc webbioc

21.1 years ago Colin A. Smith ▴ 220

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webbioc DOSE webbioc DOSE

21.1 years ago Colin A. Smith ▴ 220

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829

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webbioc webbioc

21.1 years ago Fujito Atsuya ▴ 20

17 results • Page 1 of 1

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Comment: ISO a solution to rank-order introns by transcript by mat149 ▴ 80

Hey, In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Since the intra-block correlation is negative, it would be best to remove `block` from the model. My experience with genetically identical…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by anna.cot.anna.cot ▴ 30

Thank you! This is actually quite close to my real dataset. I simplified the names to make it easier as an example, but I have now correcte…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Hi Xiaofei, Is it possible to generate a matrix of beta values or M-values with rownames as probe IDs from this data? If so, cpg.annotate(…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

That looks basically correct, although the terms that you are inputing to `makeContrasts` do not match the condition names in the targets f…

Votes

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

Answer: nightmare to make custom txdb for genomes from ToxoDB

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