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21.8 years ago • updated 17 months ago
Gordon Smyth
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Recent ...
Replies
Comment: ESTMATE, MCPcounter, EPIC, xCell input
by
Kang
•
0
These are not, as far as I know, bioconductor packages.
You should query on the websites for those specific software programs.
@[mapquest][…
Comment: Robust way of dealing with low number of samples for Differential Gene Expressio
by
Kang
•
0
I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …
Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column
by
GV Yoshikawa
•
0
Thank you for the reply. I tried swapping columns before asking, it made no difference.
head(keggframeData)
path_id kegg…
Answer: Differential Expression Analysis with unbalanced batches without replication bet
by
Gordon Smyth
51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
•
0
I just found this workaround:
httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE))
at [this Stack Overflow link][…
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