Showing : zinbwave • reset
3
votes
14
replies
1.3k
views
DESeq2 used with zinbwave weights - Differences on contrasts calculations
zinbwave DESeq2
written 5 months ago by • 0
7
votes
3
replies
2.2k
views
Effect of feature number on adjusted p-values
edgeR DESeq2 single-cell scRNAseq zinbwave
updated 4.7 years ago by ★ 29k • written 4.7 years ago by ▴ 20
0
votes
5
replies
2.8k
views
ZINB-WaVE-DESeq2 with Bulk Data: Choice of Epsilon value, K and gene number
DESeq2 ZINB zinbwave deseq
updated 5.0 years ago by 43k • written 5.0 years ago by • 0
0
votes
0
replies
1.1k
views
contradicting behavior after in low-dimensional representation with zinbwave
zinbwave PCA
5.3 years ago Assa Yeroslaviz ★ 1.5k
1
vote
4
replies
3.1k
views
How to work with duplicates calculating the differentially expressed genes in PseudoBulk-singleCell RNA experiment using zinbwave?
scRNA zinbwave batch IntegratedData
updated 5.4 years ago by ▴ 980 • written 5.4 years ago by ★ 1.5k
5
votes
3
replies
2.3k
views
Latent factors for differential expression
deseq2 zinbwave 10X scRNA-seq Differential expression
updated 5.5 years ago by 43k • written 5.5 years ago by ▴ 20
0
votes
2
replies
3.9k
views
cmdscale() error: NA values not allowed in 'd', ask for help.
cmdscale zinbwave scRNA-seq single cell sequencing RNA-seq
updated 5.6 years ago by ▴ 980 • written 5.6 years ago by ▴ 10
0
votes
2
replies
3.1k
views
How to overcome negative values obtained from vst for downstream analysis ( calculating bray-curtis and PCoA plot)?
zinbwave deseq2 vegan
updated 6.2 years ago by 68k • written 6.2 years ago by • 0
0
votes
1
reply
1.6k
views
merging RUV-corrected datasets in DESEq
deseq2 glm zinbwave ruvseq
updated 7.1 years ago by 43k • written 7.1 years ago by ▴ 50
9 results • Page 1 of 1
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Comment: Open Positions for Doctoral Researchers in Molecular Medicine by TikTs33ssalpc • 0
This rotation style program sounds like a great way to explore different fields before committing to one. Similarly, apkgamex lets users ex…
Comment: Bioconductor Maintainer Application by TikTs33ssalpc • 0
This compliance focused approach makes a lot of sense. Clear reminders and opt in policies help maintain trust, similar to how users look f…
Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
Comment: chemmineOB install help by Jeremy • 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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