Bioconductor Zinbwave

Showing : zinbwave • reset

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zinbwave DESeq2

written 3 months ago by Aurélie • 0

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edgeR DESeq2 single-cell scRNAseq zinbwave

updated 4.5 years ago by Aaron Lun ★ 29k • written 4.5 years ago by vincent.croset ▴ 20

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DESeq2 ZINB zinbwave deseq

updated 4.8 years ago by Michael Love 43k • written 4.8 years ago by rowcyclecamp • 0

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zinbwave PCA

5.1 years ago Assa Yeroslaviz ★ 1.5k

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scRNA zinbwave batch IntegratedData

updated 5.2 years ago by davide risso ▴ 980 • written 5.2 years ago by Assa Yeroslaviz ★ 1.5k

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by vincent.croset ▴ 20

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3.9k

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cmdscale zinbwave scRNA-seq single cell sequencing RNA-seq

updated 5.4 years ago by davide risso ▴ 980 • written 5.5 years ago by Wagaa ▴ 10

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zinbwave deseq2 vegan

updated 6.0 years ago by James W. MacDonald 68k • written 6.0 years ago by zcbthug • 0

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deseq2 glm zinbwave ruvseq

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by Jakub ▴ 50

9 results • Page 1 of 1

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Scholar to Gordon Smyth 53k