Bioconductor Zinbwave

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zinbwave DESeq2

written 4 months ago by Aurélie • 0

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2.2k

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edgeR DESeq2 single-cell scRNAseq zinbwave

updated 4.6 years ago by Aaron Lun ★ 29k • written 4.6 years ago by vincent.croset ▴ 20

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DESeq2 ZINB zinbwave deseq

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by rowcyclecamp • 0

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1.1k

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zinbwave PCA

5.2 years ago Assa Yeroslaviz ★ 1.5k

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scRNA zinbwave batch IntegratedData

updated 5.2 years ago by davide risso ▴ 980 • written 5.2 years ago by Assa Yeroslaviz ★ 1.5k

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by vincent.croset ▴ 20

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3.9k

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cmdscale zinbwave scRNA-seq single cell sequencing RNA-seq

updated 5.4 years ago by davide risso ▴ 980 • written 5.5 years ago by Wagaa ▴ 10

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zinbwave deseq2 vegan

updated 6.1 years ago by James W. MacDonald 68k • written 6.1 years ago by zcbthug • 0

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1.6k

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deseq2 glm zinbwave ruvseq

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by Jakub ▴ 50

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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0

For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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