Showing : zinbwave • reset
3
votes
14
replies
1.2k
views
DESeq2 used with zinbwave weights - Differences on contrasts calculations
zinbwave DESeq2
written 5 months ago by • 0
7
votes
3
replies
2.2k
views
Effect of feature number on adjusted p-values
edgeR DESeq2 single-cell scRNAseq zinbwave
updated 4.6 years ago by ★ 29k • written 4.6 years ago by ▴ 20
0
votes
5
replies
2.7k
views
ZINB-WaVE-DESeq2 with Bulk Data: Choice of Epsilon value, K and gene number
DESeq2 ZINB zinbwave deseq
updated 4.9 years ago by 43k • written 4.9 years ago by • 0
0
votes
0
replies
1.1k
views
contradicting behavior after in low-dimensional representation with zinbwave
zinbwave PCA
5.2 years ago Assa Yeroslaviz ★ 1.5k
1
vote
4
replies
3.0k
views
How to work with duplicates calculating the differentially expressed genes in PseudoBulk-singleCell RNA experiment using zinbwave?
scRNA zinbwave batch IntegratedData
updated 5.3 years ago by ▴ 980 • written 5.3 years ago by ★ 1.5k
5
votes
3
replies
2.2k
views
Latent factors for differential expression
deseq2 zinbwave 10X scRNA-seq Differential expression
updated 5.5 years ago by 43k • written 5.5 years ago by ▴ 20
0
votes
2
replies
3.9k
views
cmdscale() error: NA values not allowed in 'd', ask for help.
cmdscale zinbwave scRNA-seq single cell sequencing RNA-seq
updated 5.5 years ago by ▴ 980 • written 5.6 years ago by ▴ 10
0
votes
2
replies
3.1k
views
How to overcome negative values obtained from vst for downstream analysis ( calculating bray-curtis and PCoA plot)?
zinbwave deseq2 vegan
updated 6.1 years ago by 68k • written 6.1 years ago by • 0
0
votes
1
reply
1.6k
views
merging RUV-corrected datasets in DESEq
deseq2 glm zinbwave ruvseq
updated 7.0 years ago by 43k • written 7.0 years ago by ▴ 50
9 results • Page 1 of 1
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Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
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Answer: Limma-voom sample weights and impact on DEG numbers by Gordon Smyth 53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
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Error in SummarizedExperiment(assays = SimpleList(counts = countData)
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
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