Bioconductor Zinbwave

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zinbwave DESeq2

written 10 weeks ago by Aurélie • 0

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2.1k

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edgeR DESeq2 single-cell scRNAseq zinbwave

updated 4.4 years ago by Aaron Lun ★ 29k • written 4.4 years ago by vincent.croset ▴ 20

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2.6k

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DESeq2 ZINB zinbwave deseq

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by rowcyclecamp • 0

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1.0k

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zinbwave PCA

5.0 years ago Assa Yeroslaviz ★ 1.5k

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2.8k

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scRNA zinbwave batch IntegratedData

updated 5.1 years ago by davide risso ▴ 980 • written 5.1 years ago by Assa Yeroslaviz ★ 1.5k

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2.1k

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 5.3 years ago by Michael Love 43k • written 5.3 years ago by vincent.croset ▴ 20

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3.8k

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cmdscale zinbwave scRNA-seq single cell sequencing RNA-seq

updated 5.3 years ago by davide risso ▴ 980 • written 5.3 years ago by Wagaa ▴ 10

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3.0k

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zinbwave deseq2 vegan

updated 5.9 years ago by James W. MacDonald 68k • written 5.9 years ago by zcbthug • 0

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1.5k

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deseq2 glm zinbwave ruvseq

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by Jakub ▴ 50

9 results • Page 1 of 1

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Comment: gene Set with high AUC score but no cells assigned to cell type by eja.hdrer33ge.r.m • 0

Understanding complex data results like those from AUCell can be challenging. For easier analysis and better data management on the go you …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Answer: DESeq2 design for haplotype MPRA by Michael Love 43k

> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…

Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k

It seems fine on devel as well. ``` > BSgenome.Hsapiens.UCSC.hg38 | BSgenome object for Human | - organism: Homo sapiens | - provide…

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Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

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