Showing : zinbwave • reset
3
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14
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1.0k
views
DESeq2 used with zinbwave weights - Differences on contrasts calculations
zinbwave DESeq2
written 3 months ago by • 0
7
votes
3
replies
2.1k
views
Effect of feature number on adjusted p-values
edgeR DESeq2 single-cell scRNAseq zinbwave
updated 4.5 years ago by ★ 29k • written 4.5 years ago by ▴ 20
0
votes
5
replies
2.6k
views
ZINB-WaVE-DESeq2 with Bulk Data: Choice of Epsilon value, K and gene number
DESeq2 ZINB zinbwave deseq
updated 4.8 years ago by 43k • written 4.8 years ago by • 0
0
votes
0
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1.0k
views
contradicting behavior after in low-dimensional representation with zinbwave
zinbwave PCA
5.1 years ago Assa Yeroslaviz ★ 1.5k
1
vote
4
replies
2.9k
views
How to work with duplicates calculating the differentially expressed genes in PseudoBulk-singleCell RNA experiment using zinbwave?
scRNA zinbwave batch IntegratedData
updated 5.1 years ago by ▴ 980 • written 5.1 years ago by ★ 1.5k
5
votes
3
replies
2.1k
views
Latent factors for differential expression
deseq2 zinbwave 10X scRNA-seq Differential expression
updated 5.3 years ago by 43k • written 5.3 years ago by ▴ 20
0
votes
2
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3.9k
views
cmdscale() error: NA values not allowed in 'd', ask for help.
cmdscale zinbwave scRNA-seq single cell sequencing RNA-seq
updated 5.3 years ago by ▴ 980 • written 5.4 years ago by ▴ 10
0
votes
2
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3.0k
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How to overcome negative values obtained from vst for downstream analysis ( calculating bray-curtis and PCoA plot)?
zinbwave deseq2 vegan
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
0
votes
1
reply
1.5k
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merging RUV-corrected datasets in DESEq
deseq2 glm zinbwave ruvseq
updated 6.9 years ago by 43k • written 6.9 years ago by ▴ 50
9 results • Page 1 of 1
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Comment: Save the Date for EuroBioC2026 in Turku! by jamesbennettki • 0
That sounds amazing I have always wanted to visit Finland and meet others in the Bioconductor community Events like EuroBioC2026 inspire me…
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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