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Comment: Comment: Error in checkFullRank(modelMatrix)
2.7 years ago AZ ▴ 30
2
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2
replies
1.8k
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Error in checkFullRank(modelMatrix)
DESeq2 BatchEffect DifferentialExpression
updated 2.7 years ago by ★ 5.0k • written 2.7 years ago by ▴ 30
0
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0
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1.5k
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Comment: Comment: Removing Unwanted Variations
2.7 years ago AZ ▴ 30
1
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2
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1.5k
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Removing Unwanted Variations
DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression
2.7 years ago AZ ▴ 30
6
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2
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985
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The number of controls versus treatment in differential expression analysis
DESeq2 edgeR limma
updated 3.7 years ago by 53k • written 3.7 years ago by ▴ 30
0
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0
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2.2k
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Comment: Comment: Permanent error in installing GenomeInfoDb
4.1 years ago AZ ▴ 30
0
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3
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2.2k
views
Permanent error in installing GenomeInfoDb
GenomeInfoDb
4.1 years ago AZ ▴ 30
0
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0
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833
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Gene expression changes in one condition
RNASeq Gene ExpressionData
4.1 years ago AZ ▴ 30
0
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0
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1.3k
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Comment: Comment: Error in designing DESeq2 time pointed experiments
4.1 years ago AZ ▴ 30
0
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1
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1.3k
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Comment: Comment: Error in designing DESeq2 time pointed experiments
4.1 years ago AZ ▴ 30
1
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4
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1.3k
views
Error in designing DESeq2 time pointed experiments
LTR DESeq2
4.1 years ago AZ ▴ 30
0
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1
reply
1.0k
views
Need of some clarifications
TimeCourse DifferentialExpression DESeq2
updated 4.2 years ago by 43k • written 4.2 years ago by ▴ 30
0
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0
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2.2k
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Comment: Comment: Three conditions and two time points
4.2 years ago AZ ▴ 30
0
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1
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2.2k
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Comment: Comment: Three conditions and two time points
4.2 years ago AZ ▴ 30
0
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1
reply
2.2k
views
Comment: Comment: Three conditions and two time points
4.2 years ago • updated 4.1 years ago AZ ▴ 30
0
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1
reply
2.2k
views
Comment: Comment: Three conditions and two time points
4.2 years ago AZ ▴ 30
0
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8
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2.2k
views
Three conditions and two time points
DifferentialExpression DESeq2 time
4.2 years ago • updated 4.1 years ago AZ ▴ 30
1
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0
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3.7k
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Comment: Comment: A permanent error in DESeq2
4.4 years ago AZ ▴ 30
3
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2
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3.7k
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A permanent error in DESeq2
DESeq2
4.4 years ago AZ ▴ 30
0
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0
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2.0k
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Comment: Comment: Getting differentially expressed genes for time points
4.8 years ago AZ ▴ 30
0
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1
reply
2.0k
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Comment: Comment: Getting differentially expressed genes for time points
4.8 years ago AZ ▴ 30
0
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1
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2.0k
views
Comment: Comment: Getting differentially expressed genes for time points
4.8 years ago AZ ▴ 30
3
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7
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2.0k
views
Getting differentially expressed genes for time points
edgeR DifferentialExpression limma
updated 4.8 years ago by 53k • written 4.8 years ago by ▴ 30
1
vote
2
replies
1.8k
views
Getting error in collapsing the affy probs
affy eset
updated 4.9 years ago by 68k • written 4.9 years ago by ▴ 30
2
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1
reply
1.0k
views
Which test fits the best here
fisher wilcox t.test
5.3 years ago AZ ▴ 30
0
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2
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4.0k
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Comment: C: Having TMM for GSEA
5.3 years ago AZ ▴ 30
6
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4
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4.0k
views
Having TMM for GSEA
edger deseq2
updated 4.7 years ago by ★ 4.0k • written 5.3 years ago by ▴ 30
0
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0
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1.6k
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Comment: C: Finding genes with loss of Heterozygosity
5.6 years ago AZ ▴ 30
0
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1
reply
1.6k
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Comment: C: Finding genes with loss of Heterozygosity
5.6 years ago AZ ▴ 30
0
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1
reply
1.6k
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Comment: C: Finding genes with loss of Heterozygosity
5.6 years ago AZ ▴ 30
0
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1
reply
1.6k
views
Comment: C: Finding genes with loss of Heterozygosity
5.6 years ago AZ ▴ 30
1
vote
11
replies
1.6k
views
Finding genes with loss of Heterozygosity
genomicrange
updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by ▴ 30
5
votes
2
replies
848
views
Intersecting two big dataframe
genomicrange intersect
updated 5.7 years ago by 68k • written 5.7 years ago by ▴ 30
4
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4
replies
2.9k
views
How I interpret this plot from pathview
pathview kegg r pathway
6.1 years ago • updated 6.0 years ago AZ ▴ 30
1
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0
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2.9k
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Comment: C: How I interpret this plot from pathview
6.1 years ago AZ ▴ 30
0
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1
reply
2.9k
views
Comment: C: How I interpret this plot from pathview
6.1 years ago AZ ▴ 30
0
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1
reply
924
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Is DESeq2 performs the same when I am loading library DESeq2?
DESeq2
6.9 years ago • updated 6.1 years ago AZ ▴ 30
0
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0
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1.0k
views
Estimating sample size for specific platforms
software error RnaSeqSampleSize r RNA-seq
6.7 years ago AZ ▴ 30
0
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0
replies
1.8k
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Comment: C: Appropriate experimental design for differential expresion
6.7 years ago AZ ▴ 30
0
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1
reply
1.8k
views
Comment: C: Appropriate experimental design for differential expresion
6.7 years ago AZ ▴ 30
0
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1
reply
1.8k
views
Comment: C: Appropriate experimental design for differential expresion
6.7 years ago AZ ▴ 30
6
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7
replies
1.8k
views
Appropriate experimental design for differential expresion
edgeR normalization cancer
updated 6.7 years ago by ★ 1.4k • written 6.7 years ago by ▴ 30
0
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2
replies
1.1k
views
Problem in installing
software error deseq2
updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 30
0
votes
1
reply
946
views
Getting a signature specific to each patient
DESeq2 r cancer
updated 6.8 years ago by 68k • written 6.8 years ago by ▴ 30
0
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0
replies
2.4k
views
Comment: C: edgeR or wilcoxon rank test? Which is right?
6.9 years ago AZ ▴ 30
2
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5
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2.4k
views
edgeR or wilcoxon rank test? Which is right?
edgeR r wilcox RNA-seq cancer
6.9 years ago AZ ▴ 30
0
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1
reply
2.4k
views
Comment: C: edgeR or wilcoxon rank test? Which is right?
6.9 years ago AZ ▴ 30
0
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1
reply
1.3k
views
Comment: C: Batch correction for a sets of genes
6.9 years ago AZ ▴ 30
2
votes
3
replies
1.3k
views
Batch correction for a sets of genes
cancer deseq2 r rnaseq
updated 6.9 years ago by 43k • written 6.9 years ago by ▴ 30
0
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1
reply
2.4k
views
Comment: C: How can I use DESeq2 for exploratory analysis after batch effect removal using R
6.9 years ago AZ ▴ 30
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