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877
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Comment: Comment: Error in checkFullRank(modelMatrix)
12 months ago AZ ▴ 30
2
votes
2
replies
877
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Error in checkFullRank(modelMatrix)
DESeq2 BatchEffect DifferentialExpression
updated 12 months ago by ★ 4.1k • written 12 months ago by ▴ 30
0
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0
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852
views
Comment: Comment: Removing Unwanted Variations
12 months ago AZ ▴ 30
1
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2
replies
852
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Removing Unwanted Variations
DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression
12 months ago AZ ▴ 30
6
votes
2
replies
642
views
The number of controls versus treatment in differential expression analysis
DESeq2 edgeR limma
updated 2.1 years ago by 50k • written 2.1 years ago by ▴ 30
0
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0
replies
1.3k
views
Comment: Comment: Permanent error in installing GenomeInfoDb
2.4 years ago AZ ▴ 30
0
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3
replies
1.3k
views
Permanent error in installing GenomeInfoDb
GenomeInfoDb
2.5 years ago • updated 2.4 years ago AZ ▴ 30
0
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0
replies
531
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Gene expression changes in one condition
RNASeq Gene ExpressionData
2.5 years ago AZ ▴ 30
0
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0
replies
810
views
Comment: Comment: Error in designing DESeq2 time pointed experiments
2.5 years ago AZ ▴ 30
0
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1
reply
810
views
Comment: Comment: Error in designing DESeq2 time pointed experiments
2.5 years ago AZ ▴ 30
1
vote
4
replies
810
views
Error in designing DESeq2 time pointed experiments
LTR DESeq2
2.5 years ago AZ ▴ 30
0
votes
1
reply
698
views
Need of some clarifications
TimeCourse DifferentialExpression DESeq2
updated 2.6 years ago by 41k • written 2.6 years ago by ▴ 30
0
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0
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1.5k
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Comment: Comment: Three conditions and two time points
2.6 years ago AZ ▴ 30
0
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1
reply
1.5k
views
Comment: Comment: Three conditions and two time points
2.6 years ago AZ ▴ 30
0
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1
reply
1.5k
views
Comment: Comment: Three conditions and two time points
2.6 years ago • updated 2.5 years ago AZ ▴ 30
0
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1
reply
1.5k
views
Comment: Comment: Three conditions and two time points
2.6 years ago AZ ▴ 30
0
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8
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1.5k
views
Three conditions and two time points
DifferentialExpression DESeq2 time
2.6 years ago • updated 2.5 years ago AZ ▴ 30
1
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0
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3.1k
views
Comment: Comment: A permanent error in DESeq2
2.8 years ago AZ ▴ 30
3
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2
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3.1k
views
A permanent error in DESeq2
DESeq2
2.8 years ago AZ ▴ 30
0
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0
replies
1.4k
views
Comment: Comment: Getting differentially expressed genes for time points
3.2 years ago AZ ▴ 30
0
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1
reply
1.4k
views
Comment: Comment: Getting differentially expressed genes for time points
3.2 years ago AZ ▴ 30
0
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1
reply
1.4k
views
Comment: Comment: Getting differentially expressed genes for time points
3.2 years ago AZ ▴ 30
3
votes
7
replies
1.4k
views
Getting differentially expressed genes for time points
edgeR DifferentialExpression limma
updated 3.2 years ago by 50k • written 3.2 years ago by ▴ 30
1
vote
2
replies
1.1k
views
Getting error in collapsing the affy probs
affy eset
updated 3.3 years ago by 65k • written 3.3 years ago by ▴ 30
2
votes
1
reply
661
views
Which test fits the best here
fisher wilcox t.test
3.6 years ago AZ ▴ 30
0
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2
replies
2.9k
views
Comment: C: Having TMM for GSEA
3.7 years ago AZ ▴ 30
6
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4
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2.9k
views
Having TMM for GSEA
edger deseq2
updated 3.1 years ago by ★ 3.9k • written 3.7 years ago by ▴ 30
0
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0
replies
912
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Comment: C: Finding genes with loss of Heterozygosity
3.9 years ago AZ ▴ 30
0
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1
reply
912
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Comment: C: Finding genes with loss of Heterozygosity
4.0 years ago AZ ▴ 30
0
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1
reply
912
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Comment: C: Finding genes with loss of Heterozygosity
4.0 years ago AZ ▴ 30
0
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1
reply
912
views
Comment: C: Finding genes with loss of Heterozygosity
4.0 years ago AZ ▴ 30
1
vote
11
replies
912
views
Finding genes with loss of Heterozygosity
genomicrange
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by ▴ 30
5
votes
2
replies
554
views
Intersecting two big dataframe
genomicrange intersect
updated 4.1 years ago by 65k • written 4.1 years ago by ▴ 30
4
votes
4
replies
1.7k
views
How I interpret this plot from pathview
pathview kegg r pathway
4.5 years ago • updated 4.4 years ago AZ ▴ 30
1
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0
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1.7k
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Comment: C: How I interpret this plot from pathview
4.5 years ago AZ ▴ 30
0
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1
reply
1.7k
views
Comment: C: How I interpret this plot from pathview
4.5 years ago AZ ▴ 30
0
votes
1
reply
658
views
Is DESeq2 performs the same when I am loading library DESeq2?
DESeq2
5.2 years ago • updated 4.5 years ago AZ ▴ 30
0
votes
0
replies
706
views
Estimating sample size for specific platforms
software error RnaSeqSampleSize r RNA-seq
5.0 years ago AZ ▴ 30
0
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0
replies
1.3k
views
Comment: C: Appropriate experimental design for differential expresion
5.1 years ago AZ ▴ 30
0
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1
reply
1.3k
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Comment: C: Appropriate experimental design for differential expresion
5.1 years ago AZ ▴ 30
0
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1
reply
1.3k
views
Comment: C: Appropriate experimental design for differential expresion
5.1 years ago AZ ▴ 30
6
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7
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1.3k
views
Appropriate experimental design for differential expresion
edgeR normalization cancer
updated 5.1 years ago by ★ 1.3k • written 5.1 years ago by ▴ 30
0
votes
2
replies
667
views
Problem in installing
software error deseq2
updated 5.1 years ago by 25k • written 5.1 years ago by ▴ 30
0
votes
1
reply
664
views
Getting a signature specific to each patient
DESeq2 r cancer
updated 5.2 years ago by 65k • written 5.2 years ago by ▴ 30
0
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0
replies
1.8k
views
Comment: C: edgeR or wilcoxon rank test? Which is right?
5.3 years ago AZ ▴ 30
2
votes
5
replies
1.8k
views
edgeR or wilcoxon rank test? Which is right?
edgeR r wilcox RNA-seq cancer
5.3 years ago AZ ▴ 30
0
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1
reply
1.8k
views
Comment: C: edgeR or wilcoxon rank test? Which is right?
5.3 years ago AZ ▴ 30
0
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1
reply
976
views
Comment: C: Batch correction for a sets of genes
5.3 years ago AZ ▴ 30
2
votes
3
replies
976
views
Batch correction for a sets of genes
cancer deseq2 r rnaseq
updated 5.3 years ago by 41k • written 5.3 years ago by ▴ 30
0
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1
reply
1.9k
views
Comment: C: How can I use DESeq2 for exploratory analysis after batch effect removal using R
5.3 years ago AZ ▴ 30
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