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0
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908
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Comment: Comment: Error in checkFullRank(modelMatrix)
13 months ago AZ ▴ 30
2
votes
2
replies
908
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Error in checkFullRank(modelMatrix)
DESeq2 BatchEffect DifferentialExpression
updated 13 months ago by ★ 4.1k • written 13 months ago by ▴ 30
0
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0
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873
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Comment: Comment: Removing Unwanted Variations
13 months ago AZ ▴ 30
1
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2
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873
views
Removing Unwanted Variations
DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression
13 months ago AZ ▴ 30
6
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2
replies
649
views
The number of controls versus treatment in differential expression analysis
DESeq2 edgeR limma
updated 2.2 years ago by 50k • written 2.2 years ago by ▴ 30
0
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0
replies
1.3k
views
Comment: Comment: Permanent error in installing GenomeInfoDb
2.5 years ago AZ ▴ 30
0
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3
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1.3k
views
Permanent error in installing GenomeInfoDb
GenomeInfoDb
2.5 years ago AZ ▴ 30
0
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0
replies
539
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Gene expression changes in one condition
RNASeq Gene ExpressionData
2.5 years ago AZ ▴ 30
0
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0
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823
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Comment: Comment: Error in designing DESeq2 time pointed experiments
2.6 years ago AZ ▴ 30
0
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1
reply
823
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Comment: Comment: Error in designing DESeq2 time pointed experiments
2.6 years ago AZ ▴ 30
1
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4
replies
823
views
Error in designing DESeq2 time pointed experiments
LTR DESeq2
2.6 years ago AZ ▴ 30
0
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1
reply
704
views
Need of some clarifications
TimeCourse DifferentialExpression DESeq2
updated 2.6 years ago by 42k • written 2.6 years ago by ▴ 30
0
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0
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1.5k
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Comment: Comment: Three conditions and two time points
2.6 years ago AZ ▴ 30
0
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1
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1.5k
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Comment: Comment: Three conditions and two time points
2.6 years ago AZ ▴ 30
0
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1
reply
1.5k
views
Comment: Comment: Three conditions and two time points
2.6 years ago AZ ▴ 30
0
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1
reply
1.5k
views
Comment: Comment: Three conditions and two time points
2.6 years ago AZ ▴ 30
0
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8
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1.5k
views
Three conditions and two time points
DifferentialExpression DESeq2 time
2.6 years ago AZ ▴ 30
1
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0
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3.2k
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Comment: Comment: A permanent error in DESeq2
2.8 years ago AZ ▴ 30
3
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2
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3.2k
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A permanent error in DESeq2
DESeq2
2.8 years ago AZ ▴ 30
0
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0
replies
1.4k
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Comment: Comment: Getting differentially expressed genes for time points
3.2 years ago AZ ▴ 30
0
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1
reply
1.4k
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Comment: Comment: Getting differentially expressed genes for time points
3.2 years ago AZ ▴ 30
0
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1
reply
1.4k
views
Comment: Comment: Getting differentially expressed genes for time points
3.2 years ago AZ ▴ 30
3
votes
7
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1.4k
views
Getting differentially expressed genes for time points
edgeR DifferentialExpression limma
updated 3.2 years ago by 50k • written 3.2 years ago by ▴ 30
1
vote
2
replies
1.1k
views
Getting error in collapsing the affy probs
affy eset
updated 3.3 years ago by 65k • written 3.3 years ago by ▴ 30
2
votes
1
reply
669
views
Which test fits the best here
fisher wilcox t.test
3.7 years ago AZ ▴ 30
0
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2
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2.9k
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Comment: C: Having TMM for GSEA
3.7 years ago AZ ▴ 30
6
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4
replies
2.9k
views
Having TMM for GSEA
edger deseq2
updated 3.2 years ago by ★ 3.9k • written 3.7 years ago by ▴ 30
0
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0
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920
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Comment: C: Finding genes with loss of Heterozygosity
4.0 years ago AZ ▴ 30
0
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1
reply
920
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Comment: C: Finding genes with loss of Heterozygosity
4.1 years ago AZ ▴ 30
0
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1
reply
920
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Comment: C: Finding genes with loss of Heterozygosity
4.1 years ago AZ ▴ 30
0
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1
reply
920
views
Comment: C: Finding genes with loss of Heterozygosity
4.1 years ago AZ ▴ 30
1
vote
11
replies
920
views
Finding genes with loss of Heterozygosity
genomicrange
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by ▴ 30
5
votes
2
replies
562
views
Intersecting two big dataframe
genomicrange intersect
updated 4.1 years ago by 65k • written 4.1 years ago by ▴ 30
4
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4
replies
1.8k
views
How I interpret this plot from pathview
pathview kegg r pathway
4.5 years ago AZ ▴ 30
1
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0
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1.8k
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Comment: C: How I interpret this plot from pathview
4.5 years ago AZ ▴ 30
0
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1
reply
1.8k
views
Comment: C: How I interpret this plot from pathview
4.5 years ago AZ ▴ 30
0
votes
1
reply
661
views
Is DESeq2 performs the same when I am loading library DESeq2?
DESeq2
5.3 years ago • updated 4.5 years ago AZ ▴ 30
0
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0
replies
712
views
Estimating sample size for specific platforms
software error RnaSeqSampleSize r RNA-seq
5.1 years ago AZ ▴ 30
0
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0
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1.3k
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Comment: C: Appropriate experimental design for differential expresion
5.2 years ago AZ ▴ 30
0
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1
reply
1.3k
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Comment: C: Appropriate experimental design for differential expresion
5.2 years ago AZ ▴ 30
0
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1
reply
1.3k
views
Comment: C: Appropriate experimental design for differential expresion
5.2 years ago AZ ▴ 30
6
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7
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1.3k
views
Appropriate experimental design for differential expresion
edgeR normalization cancer
updated 5.2 years ago by ★ 1.4k • written 5.2 years ago by ▴ 30
0
votes
2
replies
681
views
Problem in installing
software error deseq2
updated 5.2 years ago by 25k • written 5.2 years ago by ▴ 30
0
votes
1
reply
670
views
Getting a signature specific to each patient
DESeq2 r cancer
updated 5.2 years ago by 65k • written 5.2 years ago by ▴ 30
0
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0
replies
1.8k
views
Comment: C: edgeR or wilcoxon rank test? Which is right?
5.3 years ago AZ ▴ 30
2
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5
replies
1.8k
views
edgeR or wilcoxon rank test? Which is right?
edgeR r wilcox RNA-seq cancer
5.3 years ago AZ ▴ 30
0
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1
reply
1.8k
views
Comment: C: edgeR or wilcoxon rank test? Which is right?
5.3 years ago AZ ▴ 30
0
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1
reply
985
views
Comment: C: Batch correction for a sets of genes
5.3 years ago AZ ▴ 30
2
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3
replies
985
views
Batch correction for a sets of genes
cancer deseq2 r rnaseq
updated 5.3 years ago by 42k • written 5.3 years ago by ▴ 30
0
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1
reply
1.9k
views
Comment: C: How can I use DESeq2 for exploratory analysis after batch effect removal using R
5.3 years ago AZ ▴ 30
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