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Comment: Comment: how limma work with continous variables
17 months ago adR ▴ 40
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4
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how limma work with continous variables
GordonSmyth limmaGUI lmFit voom
updated 17 months ago by 53k • written 17 months ago by ▴ 40
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1.3k
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how to call an app from Cytoscape using R?
RCy3
updated 2.9 years ago by ▴ 30 • written 2.9 years ago by ▴ 40
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0
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9.2k
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Answer: Answer: DESeq2 - Error: full model matrix is less than full rank
3.2 years ago adR ▴ 40
3
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5
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5.3k
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how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 3.3 years ago by ★ 1.2k • written 3.6 years ago by ▴ 40
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Comment: Comment: how to color specific node or gene symbol from cnetplot ?
3.6 years ago adR ▴ 40
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1.5k
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Comment: Comment: how to change axis labeling in limma density plot
3.7 years ago adR ▴ 40
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3
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1.5k
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how to change axis labeling in limma density plot
desnity limma
updated 3.7 years ago by 53k • written 3.7 years ago by ▴ 40
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0
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1.8k
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Comment: Comment: normalizing EXOM-seq read using DESeq2
4.1 years ago adR ▴ 40
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1
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1.8k
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Comment: Comment: normalizing EXOM-seq read using DESeq2
4.1 years ago adR ▴ 40
0
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4
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1.8k
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normalizing EXOM-seq read using DESeq2
ExomeSeq DESeq2
4.1 years ago adR ▴ 40
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1
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1.1k
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quantifying exom reads featureCount
ExomeSeq featureCount
4.1 years ago adR ▴ 40
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0
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1.1k
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Answer: Answer: quantifying exom reads featureCount
4.1 years ago adR ▴ 40
0
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11k
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Comment: Comment: DESeq2 One-way ANOVA with 3 sample groups?
4.1 years ago adR ▴ 40
0
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2
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1.2k
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R/Bioconductor package for Circulating Cell-Free DNA data analysis
SequencingData
4.2 years ago • updated 4.1 years ago adR ▴ 40
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0
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1.2k
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Comment: Comment: R/Bioconductor package for Circulating Cell-Free DNA data analysis
4.1 years ago adR ▴ 40
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1.8k
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Comment: Comment: package for ATACseq data analysis
4.2 years ago adR ▴ 40
0
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3
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1.8k
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package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 3.3 years ago by ★ 5.2k • written 4.2 years ago by ▴ 40
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1
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2.2k
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Unable to install SSPA packages
SSPA
updated 4.5 years ago by ★ 5.0k • written 4.5 years ago by ▴ 40
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0
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14k
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Comment: Comment: .onLoad failed in loadNamespace() for 'org.Hs.eg.db'
4.7 years ago adR ▴ 40
0
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0
replies
1.0k
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How to show rownames in densityheatmaps
ComplexHeatmap
5.1 years ago adR ▴ 40
0
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1
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801
views
studying periodicity among small number of gene transcripts
DiscoRhythm
updated 4.6 years ago by • 0 • written 5.1 years ago by ▴ 40
1
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1
reply
882
views
Any possiblity applying
WGCNA
updated 5.1 years ago by ★ 4.0k • written 5.1 years ago by ▴ 40
1
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1
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762
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correlation analysis
Hmisc
updated 5.2 years ago by 43k • written 5.2 years ago by ▴ 40
0
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0
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1.9k
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Comment: C: Warning messages: gseaKEGG
5.4 years ago adR ▴ 40
0
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2
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1.9k
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Warning messages: gseaKEGG
clusterProfiler r Tutorial
updated 5.4 years ago by ★ 4.0k • written 5.4 years ago by ▴ 40
4
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1
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9.6k
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Warning message as converting gene Symbol to ENTREZID
go clusterprofiler
updated 5.5 years ago by 68k • written 5.5 years ago by ▴ 40
0
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0
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7.0k
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Comment: C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
5.5 years ago adR ▴ 40
0
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1
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7.0k
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Comment: C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
5.5 years ago adR ▴ 40
0
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1
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7.0k
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Comment: C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
5.5 years ago adR ▴ 40
0
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1
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7.0k
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Comment: C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
5.5 years ago adR ▴ 40
5
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9
replies
7.0k
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Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
microarray affy
updated 5.5 years ago by ★ 4.0k • written 5.5 years ago by ▴ 40
0
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1
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27k
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Answer: C: Installing EnhancedVolcano package in R
5.5 years ago adR ▴ 40
2
votes
1
reply
710
views
small number of significant gene
deseq2
updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by ▴ 40
2
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1
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1.9k
views
DESeq Data Set From Matrix
deseq2
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 40
0
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0
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14k
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Comment: C: DESeq2 vs edgeR results analysis
5.7 years ago adR ▴ 40
3
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5
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14k
views
DESeq2 vs edgeR results analysis
deseq2 edgeR
updated 3.9 years ago by 53k • written 5.7 years ago by ▴ 40
0
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0
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14k
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Comment: C: DESeq2 vs edgeR results analysis
5.7 years ago adR ▴ 40
2
votes
2
replies
3.3k
views
how to do normalization using edgeR
edger
updated 5.7 years ago by 53k • written 5.7 years ago by ▴ 40
1
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1
reply
1.4k
views
Design edger with one or more continues variables
edger
updated 5.7 years ago by 53k • written 5.7 years ago by ▴ 40
0
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1
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1.9k
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mcols(object)$betaConv. Use larger maxit argument with nbinomWaldTest")
deseq2
updated 5.8 years ago by 43k • written 5.8 years ago by ▴ 40
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1
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1.8k
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Comment: C: DESeq2 result extraction
5.8 years ago adR ▴ 40
2
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4
replies
1.8k
views
DESeq2 result extraction
deseq2
updated 5.8 years ago by 43k • written 5.8 years ago by ▴ 40
0
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0
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522
views
DESeq2 analysis with scaled continues variables
normalization
5.8 years ago adR ▴ 40
0
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1
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5.9k
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Comment: C: Centering and scaling numeric variables
5.8 years ago adR ▴ 40
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1
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1.5k
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Comment: A: Design DESeq2 with one or more continues variables
5.8 years ago adR ▴ 40
1
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3
replies
1.5k
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Design DESeq2 with one or more continues variables
deseq2
5.8 years ago adR ▴ 40
0
votes
2
replies
5.9k
views
Comment: A: Centering and scaling numeric variables
5.8 years ago adR ▴ 40
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