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how to call an app from Cytoscape using R?
RCy3
updated 15 months ago by ▴ 20 • written 15 months ago by ▴ 30
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0
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6.8k
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Answer: Answer: DESeq2 - Error: full model matrix is less than full rank
19 months ago adR ▴ 30
3
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5
replies
3.1k
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how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 20 months ago by ★ 1.2k • written 23 months ago by ▴ 30
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0
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3.1k
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Comment: Comment: how to color specific node or gene symbol from cnetplot ?
23 months ago adR ▴ 30
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1
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969
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Comment: Comment: how to change axis labeling in limma density plot
2.1 years ago adR ▴ 30
1
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3
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969
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how to change axis labeling in limma density plot
desnity limma
updated 2.1 years ago by 50k • written 2.1 years ago by ▴ 30
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0
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1.2k
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Comment: Comment: normalizing EXOM-seq read using DESeq2
2.4 years ago adR ▴ 30
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1
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1.2k
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Comment: Comment: normalizing EXOM-seq read using DESeq2
2.4 years ago adR ▴ 30
0
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4
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1.2k
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normalizing EXOM-seq read using DESeq2
ExomeSeq DESeq2
2.4 years ago adR ▴ 30
0
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1
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657
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quantifying exom reads featureCount
ExomeSeq featureCount
2.4 years ago adR ▴ 30
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0
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657
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Answer: Answer: quantifying exom reads featureCount
2.4 years ago adR ▴ 30
0
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1
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10.0k
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Comment: Comment: DESeq2 One-way ANOVA with 3 sample groups?
2.5 years ago adR ▴ 30
0
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2
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768
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R/Bioconductor package for Circulating Cell-Free DNA data analysis
SequencingData
2.5 years ago adR ▴ 30
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0
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768
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Comment: Comment: R/Bioconductor package for Circulating Cell-Free DNA data analysis
2.5 years ago adR ▴ 30
0
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1
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1.1k
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Comment: Comment: package for ATACseq data analysis
2.5 years ago adR ▴ 30
0
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3
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1.1k
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package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 20 months ago by ★ 5.1k • written 2.5 years ago by ▴ 30
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1
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1.7k
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Unable to install SSPA packages
SSPA
updated 2.8 years ago by ★ 4.0k • written 2.8 years ago by ▴ 30
1
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0
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11k
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Comment: Comment: .onLoad failed in loadNamespace() for 'org.Hs.eg.db'
3.0 years ago adR ▴ 30
0
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0
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637
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How to show rownames in densityheatmaps
ComplexHeatmap
3.4 years ago adR ▴ 30
0
votes
1
reply
500
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studying periodicity among small number of gene transcripts
DiscoRhythm
updated 3.0 years ago by • 0 • written 3.4 years ago by ▴ 30
1
vote
1
reply
598
views
Any possiblity applying
WGCNA
updated 3.5 years ago by ★ 3.9k • written 3.5 years ago by ▴ 30
1
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1
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493
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correlation analysis
Hmisc
updated 3.5 years ago by 41k • written 3.5 years ago by ▴ 30
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0
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1.2k
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Comment: C: Warning messages: gseaKEGG
3.7 years ago adR ▴ 30
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2
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1.2k
views
Warning messages: gseaKEGG
clusterProfiler r Tutorial
updated 3.7 years ago by ★ 3.9k • written 3.7 years ago by ▴ 30
4
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1
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6.0k
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Warning message as converting gene Symbol to ENTREZID
go clusterprofiler
updated 3.8 years ago by 65k • written 3.8 years ago by ▴ 30
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0
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3.0k
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Comment: C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
3.8 years ago adR ▴ 30
0
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1
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3.0k
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Comment: C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
3.8 years ago adR ▴ 30
0
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1
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3.0k
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Comment: C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
3.8 years ago adR ▴ 30
0
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1
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3.0k
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Comment: C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
3.8 years ago adR ▴ 30
5
votes
9
replies
3.0k
views
Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
microarray affy
updated 3.8 years ago by ★ 3.9k • written 3.8 years ago by ▴ 30
0
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1
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22k
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Answer: C: Installing EnhancedVolcano package in R
3.8 years ago adR ▴ 30
2
votes
1
reply
417
views
small number of significant gene
deseq2
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by ▴ 30
2
votes
1
reply
1.2k
views
DESeq Data Set From Matrix
deseq2
updated 4.0 years ago by 41k • written 4.0 years ago by ▴ 30
0
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0
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8.0k
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Comment: C: DESeq2 vs edgeR results analysis
4.0 years ago adR ▴ 30
3
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5
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8.0k
views
DESeq2 vs edgeR results analysis
deseq2 edgeR
updated 2.3 years ago by 50k • written 4.0 years ago by ▴ 30
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0
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8.0k
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Comment: C: DESeq2 vs edgeR results analysis
4.0 years ago adR ▴ 30
1
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2
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2.1k
views
how to do normalization using edgeR
edger
updated 4.0 years ago by 50k • written 4.0 years ago by ▴ 30
1
vote
1
reply
861
views
Design edger with one or more continues variables
edger
updated 4.0 years ago by 50k • written 4.0 years ago by ▴ 30
0
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1
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1.2k
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mcols(object)$betaConv. Use larger maxit argument with nbinomWaldTest")
deseq2
updated 4.1 years ago by 41k • written 4.1 years ago by ▴ 30
0
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1
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1.2k
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Comment: C: DESeq2 result extraction
4.1 years ago adR ▴ 30
2
votes
4
replies
1.2k
views
DESeq2 result extraction
deseq2
updated 4.1 years ago by 41k • written 4.1 years ago by ▴ 30
0
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0
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336
views
DESeq2 analysis with scaled continues variables
normalization
4.1 years ago adR ▴ 30
0
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1
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3.8k
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Comment: C: Centering and scaling numeric variables
4.1 years ago adR ▴ 30
0
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1
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984
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Comment: A: Design DESeq2 with one or more continues variables
4.1 years ago adR ▴ 30
1
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3
replies
984
views
Design DESeq2 with one or more continues variables
deseq2
4.1 years ago adR ▴ 30
0
votes
2
replies
3.8k
views
Comment: A: Centering and scaling numeric variables
4.1 years ago adR ▴ 30
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