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how to call an app from Cytoscape using R?
RCy3
updated 15 months ago by
alex.pico
▴ 20 • written 15 months ago by
adR
▴ 30
0
votes
0
replies
6.9k
views
Answer:
Answer: DESeq2 - Error: full model matrix is less than full rank
19 months ago
adR
▴ 30
3
votes
5
replies
3.2k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler
enrichplot
cnetplot
GuangchuangYu
updated 20 months ago by
Guangchuang Yu
★ 1.2k • written 23 months ago by
adR
▴ 30
0
votes
0
replies
3.2k
views
Comment:
Comment: how to color specific node or gene symbol from cnetplot ?
23 months ago
adR
▴ 30
0
votes
1
reply
980
views
Comment:
Comment: how to change axis labeling in limma density plot
2.1 years ago
adR
▴ 30
1
vote
3
replies
980
views
how to change axis labeling in limma density plot
desnity
limma
updated 2.1 years ago by
Gordon Smyth
50k • written 2.1 years ago by
adR
▴ 30
0
votes
0
replies
1.2k
views
Comment:
Comment: normalizing EXOM-seq read using DESeq2
2.4 years ago
adR
▴ 30
0
votes
1
reply
1.2k
views
Comment:
Comment: normalizing EXOM-seq read using DESeq2
2.4 years ago
adR
▴ 30
0
votes
4
replies
1.2k
views
normalizing EXOM-seq read using DESeq2
ExomeSeq
DESeq2
2.4 years ago
adR
▴ 30
0
votes
1
reply
669
views
quantifying exom reads featureCount
ExomeSeq
featureCount
2.5 years ago
adR
▴ 30
0
votes
0
replies
669
views
Answer:
Answer: quantifying exom reads featureCount
2.5 years ago
adR
▴ 30
0
votes
1
reply
10k
views
Comment:
Comment: DESeq2 One-way ANOVA with 3 sample groups?
2.5 years ago
adR
▴ 30
0
votes
2
replies
778
views
R/Bioconductor package for Circulating Cell-Free DNA data analysis
SequencingData
2.6 years ago • updated 2.5 years ago
adR
▴ 30
0
votes
0
replies
778
views
Comment:
Comment: R/Bioconductor package for Circulating Cell-Free DNA data analysis
2.5 years ago
adR
▴ 30
0
votes
1
reply
1.1k
views
Comment:
Comment: package for ATACseq data analysis
2.6 years ago
adR
▴ 30
0
votes
3
replies
1.1k
views
package for ATACseq data analysis
SequencingData
ATACSeq
ATACseqQC
updated 20 months ago by
Rory Stark
★ 5.2k • written 2.6 years ago by
adR
▴ 30
0
votes
1
reply
1.7k
views
Unable to install SSPA packages
SSPA
updated 2.8 years ago by
ATpoint
★ 4.1k • written 2.8 years ago by
adR
▴ 30
1
vote
0
replies
11k
views
Comment:
Comment: .onLoad failed in loadNamespace() for 'org.Hs.eg.db'
3.1 years ago
adR
▴ 30
0
votes
0
replies
645
views
How to show rownames in densityheatmaps
ComplexHeatmap
3.4 years ago
adR
▴ 30
0
votes
1
reply
504
views
studying periodicity among small number of gene transcripts
DiscoRhythm
updated 3.0 years ago by
matthew.carlucci
• 0 • written 3.4 years ago by
adR
▴ 30
1
vote
1
reply
604
views
Any possiblity applying
WGCNA
updated 3.5 years ago by
Kevin Blighe
★ 3.9k • written 3.5 years ago by
adR
▴ 30
1
vote
1
reply
495
views
correlation analysis
Hmisc
updated 3.5 years ago by
Michael Love
41k • written 3.5 years ago by
adR
▴ 30
0
votes
0
replies
1.3k
views
Comment:
C: Warning messages: gseaKEGG
3.7 years ago
adR
▴ 30
0
votes
2
replies
1.3k
views
Warning messages: gseaKEGG
clusterProfiler
r
Tutorial
updated 3.7 years ago by
Kevin Blighe
★ 3.9k • written 3.7 years ago by
adR
▴ 30
4
votes
1
reply
6.0k
views
Warning message as converting gene Symbol to ENTREZID
go
clusterprofiler
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
adR
▴ 30
0
votes
0
replies
3.1k
views
Comment:
C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
3.9 years ago
adR
▴ 30
0
votes
1
reply
3.1k
views
Comment:
C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
3.9 years ago
adR
▴ 30
0
votes
1
reply
3.1k
views
Comment:
C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
3.9 years ago
adR
▴ 30
0
votes
1
reply
3.1k
views
Comment:
C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
3.9 years ago
adR
▴ 30
5
votes
9
replies
3.1k
views
Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
microarray
affy
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
adR
▴ 30
0
votes
1
reply
22k
views
Answer:
C: Installing EnhancedVolcano package in R
3.9 years ago
adR
▴ 30
2
votes
1
reply
422
views
small number of significant gene
deseq2
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
adR
▴ 30
2
votes
1
reply
1.3k
views
DESeq Data Set From Matrix
deseq2
updated 4.0 years ago by
Michael Love
41k • written 4.0 years ago by
adR
▴ 30
0
votes
0
replies
8.1k
views
Comment:
C: DESeq2 vs edgeR results analysis
4.0 years ago
adR
▴ 30
3
votes
5
replies
8.1k
views
DESeq2 vs edgeR results analysis
deseq2
edgeR
updated 2.3 years ago by
Gordon Smyth
50k • written 4.0 years ago by
adR
▴ 30
0
votes
0
replies
8.1k
views
Comment:
C: DESeq2 vs edgeR results analysis
4.0 years ago
adR
▴ 30
1
vote
2
replies
2.1k
views
how to do normalization using edgeR
edger
updated 4.1 years ago by
Gordon Smyth
50k • written 4.1 years ago by
adR
▴ 30
1
vote
1
reply
868
views
Design edger with one or more continues variables
edger
updated 4.1 years ago by
Gordon Smyth
50k • written 4.1 years ago by
adR
▴ 30
0
votes
1
reply
1.2k
views
mcols(object)$betaConv. Use larger maxit argument with nbinomWaldTest")
deseq2
updated 4.1 years ago by
Michael Love
41k • written 4.1 years ago by
adR
▴ 30
0
votes
1
reply
1.2k
views
Comment:
C: DESeq2 result extraction
4.1 years ago
adR
▴ 30
2
votes
4
replies
1.2k
views
DESeq2 result extraction
deseq2
updated 4.1 years ago by
Michael Love
41k • written 4.1 years ago by
adR
▴ 30
0
votes
0
replies
339
views
DESeq2 analysis with scaled continues variables
normalization
4.1 years ago
adR
▴ 30
0
votes
1
reply
3.8k
views
Comment:
C: Centering and scaling numeric variables
4.1 years ago
adR
▴ 30
1
vote
3
replies
996
views
Design DESeq2 with one or more continues variables
deseq2
4.1 years ago
adR
▴ 30
0
votes
1
reply
996
views
Comment:
A: Design DESeq2 with one or more continues variables
4.1 years ago
adR
▴ 30
0
votes
2
replies
3.8k
views
Comment:
A: Centering and scaling numeric variables
4.1 years ago
adR
▴ 30
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