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need help with Diffbind multiple groups
DiffBind
ChIPSeqData
8 hours ago
Dinesh
• 0
3
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4
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95
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Help with running egsea()
EGSEA
11 hours ago • updated 9 hours ago
Chris
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Bioc204
6 weeks ago • updated 12 hours ago
shepherl
3.9k
2
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1
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45
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How to save the DEXSeq results
DEXSeq
updated 15 hours ago by
Michael Love
41k • written 15 hours ago by
Sara
• 0
3
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3
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133
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Method to find pathways different between 2 groups
fgsea
GSVA
CAMERA
updated 15 hours ago by
Robert Castelo
★ 3.3k • written 1 day ago by
Chris
• 0
0
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3
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83
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Couldn't connect to server while using "pathways"
graphite
updated 11 hours ago by
Michael Love
41k • written 23 hours ago by
fduguchunhui
• 0
1
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1
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60
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Trim/Filter out-of-bounds GRanges
GenomicRanges
updated 16 hours ago by
Michael Love
41k • written 16 hours ago by
mat149
▴ 70
1
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3
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123
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Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it does not happen in Linux
GenomAutomorphism
updated 7 hours ago by
Hervé Pagès
16k • written 1 day ago by
robersy
• 0
0
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34
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2.6k
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How to use bootRanges to bootstrap small RNA loci (nullranges package)
bootRanges
nullranges
15 months ago • updated 9 hours ago
Poonam
• 0
2
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3
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158
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package goseq seems to be not available on the latest version of R
goseq
updated 19 hours ago by
Gordon Smyth
50k • written 3 days ago by
Patrycja
▴ 20
4
votes
2
replies
534
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Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea
edgeR
4 days ago • updated 12 hours ago
gene_bioconductor
▴ 10
8
votes
7
replies
1.7k
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SGSeq: moving toward diffex from SGSeq analysis
sgseq
rnaseq
updated 21 hours ago by
Sara
• 0 • written 6.7 years ago by
Sylvain Foisy
▴ 80
1
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2
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188
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Improving the design matrices vignette in RNAseq123
RNAseq123
14 days ago • updated 17 hours ago
Lluís Revilla Sancho
▴ 730
0
votes
3
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3.7k
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[Mfuzz] Error in cmeans(exprs(eset)
Mfuzz
Mfuzz
updated 11 hours ago by
Caio
• 0 • written 13.1 years ago by
boczniak767
▴ 720
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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