0
votes
1
reply
915
views
DEXSeq, gene not testable due to 2 out of 84 exons with a low nr of counts
GO GO
updated 12.1 years ago by ★ 3.8k • written 12.1 years ago by ▴ 20
0
votes
2
replies
1.4k
views
Isobar module
isobar isobar
updated 12.1 years ago by ★ 8.2k • written 12.1 years ago by ▴ 10
0
votes
2
replies
1.1k
views
Bug in GenomicRanges 1.14.3, as(from, "GRanges") not working for RleViewsList
GenomicRanges GenomicRanges
updated 12.1 years ago by 16k • written 12.1 years ago by ▴ 20
0
votes
1
reply
877
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AWS / Bioconductor bug
updated 12.1 years ago by ★ 8.2k • written 12.1 years ago by ▴ 10
0
votes
1
reply
1.1k
views
AnnotationHub resource down?
GO GO
updated 12.1 years ago by ★ 8.2k • written 12.1 years ago by 68k
0
votes
2
replies
4.9k
views
Annotate - gene name to ENSEMBL
Microarray GO lumi Microarray GO lumi
updated 12.1 years ago by ▴ 400 • written 12.1 years ago by ▴ 180
0
votes
2
replies
2.4k
views
BSgenome.Mmusculus.UCSC.mm10 and upstream sequences.
Mus musculus BSgenome BSgenome Mus musculus BSgenome BSgenome
updated 12.1 years ago by 16k • written 12.1 years ago by ▴ 760
0
votes
0
replies
1.2k
views
Problem with topTable function (after Bioconductor update)
12.1 years ago Gordon Smyth 53k
0
votes
2
replies
2.1k
views
autoplot transcriptDb error with some regions
TranscriptDb biovizBase ggbio TranscriptDb biovizBase ggbio
updated 12.1 years ago by ▴ 490 • written 12.1 years ago by ★ 1.6k
0
votes
8
replies
1.9k
views
ggbio::plotIdeogram() not working on R 3.0.2
updated 12.1 years ago by ▴ 490 • written 12.1 years ago by ★ 1.1k
0
votes
2
replies
1.8k
views
Calculating quantiles from very long Rle's that need to be aggregated
updated 12.1 years ago by ★ 11k • written 12.1 years ago by ★ 1.1k
0
votes
1
reply
1.8k
views
Combat
updated 12.1 years ago by ★ 3.0k • written 12.1 years ago by ▴ 20
0
votes
0
replies
1.5k
views
DEG Calling on Transcripts vs Genes
Biophysics limma Biophysics limma
12.1 years ago Yogesh Saletore ▴ 10
0
votes
0
replies
1.2k
views
Problem with GenomicRanges 1.14.3, as(from, \"GRanges\") not working for RleViewsList
GenomicRanges GenomicRanges
12.1 years ago Guest User ★ 13k
0
votes
2
replies
1.4k
views
� SequenceAnalysisData� is not available
updated 12.1 years ago by ★ 8.2k • written 12.1 years ago by ★ 13k
0
votes
0
replies
1.1k
views
Loading eSet.r objects from ArrayExpress
12.1 years ago boczniak767 ▴ 740
0
votes
2
replies
2.1k
views
getAnnMap: package hugene10stv1 not available
updated 12.1 years ago by 6.7k • written 12.1 years ago by ★ 13k
0
votes
3
replies
1.4k
views
What packages needed for anti-correlated clustering?
updated 12.1 years ago by ★ 4.2k • written 12.2 years ago by ▴ 10
0
votes
3
replies
1.3k
views
VariantAnnotation: Specifying 'seqinfo' at import with 'readVcf'
GenomicRanges GenomicRanges
updated 12.1 years ago by ★ 11k • written 12.1 years ago by ★ 1.3k
0
votes
0
replies
1.4k
views
Human Gene 1.1 st array
cdf cdf
12.1 years ago Jerry Cholo ▴ 190
0
votes
0
replies
1.3k
views
Retrieve GO terms for unanontaded organism and do enrichment by myself
Proteomics GO Organism Proteomics GO Organism
12.1 years ago Ricardo Silva ▴ 110
0
votes
1
reply
1.2k
views
2d loess
updated 12.1 years ago by 6.7k • written 12.1 years ago by ★ 13k
0
votes
0
replies
1.0k
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Problem with the oligo package for nimblegen analysis
Biobase Biobase
12.1 years ago William Oldham ▴ 10
0
votes
1
reply
1.4k
views
Fwd: [devteam-bioc] information about genefilter package
Microarray genefilter limma Microarray genefilter limma
updated 12.1 years ago by 68k • written 12.2 years ago by 16k
0
votes
0
replies
1.6k
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Adding logFC values to a custom annotation TopGO object
12.1 years ago biotech ▴ 160
0
votes
3
replies
2.2k
views
help with SCAN.UPC and u133aaofav2
Annotation Annotation
updated 12.1 years ago by ▴ 600 • written 12.2 years ago by ▴ 360
0
votes
1
reply
1.4k
views
New GO terms after TopGO enrichment? (updated)
GO topGO GO topGO
updated 12.1 years ago by ▴ 160 • written 12.2 years ago by ▴ 400
0
votes
3
replies
2.2k
views
Summarization by gene or exon or transcript
QuasR QuasR
12.2 years ago Michael Stadler ▴ 350
0
votes
0
replies
2.2k
views
Create a sample file /tab delimited file in QuasR
BSgenome convert BSgenome genomes QuasR BSgenome convert BSgenome genomes QuasR
12.2 years ago Michael Stadler ▴ 350
0
votes
1
reply
1.9k
views
rtrackleyer/GenomicRanges: How can I group GRanges by metadata attributes
updated 12.2 years ago by ★ 11k • written 12.2 years ago by ★ 13k
0
votes
2
replies
3.4k
views
pathview -- ID Problem?
graph pathview graph pathview
updated 12.2 years ago by ▴ 40 • written 12.2 years ago by ★ 1.6k
0
votes
4
replies
2.0k
views
perspective on differential expression counting - unmapped reads?
edgeR edgeR
updated 12.2 years ago by ▴ 200 • written 12.2 years ago by ▴ 60
0
votes
7
replies
1.4k
views
Summarization by gene or exon or transcript
12.2 years ago Reema Singh ▴ 570
0
votes
2
replies
2.0k
views
Unable to load xps...
xps xps
updated 12.2 years ago by ★ 3.9k • written 12.2 years ago by ▴ 150
0
votes
1
reply
1.5k
views
help with limma design, contrast matrices
Microarray limma Microarray limma
updated 12.2 years ago by ★ 7.9k • written 12.2 years ago by ▴ 50
0
votes
1
reply
3.5k
views
How to get length information for mm10 genome and geneID gene Symbol?
goseq goseq
updated 12.2 years ago by ★ 7.2k • written 12.2 years ago by ▴ 10
0
votes
3
replies
4.4k
views
getting RPKM or TPM values
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 30
0
votes
1
reply
1.4k
views
Patient and matched control paired data
edgeR edgeR
updated 12.2 years ago by 68k • written 12.2 years ago by ★ 13k
0
votes
0
replies
1.2k
views
MethyLumiM to MethyLumiSet?
convert lumi methylumi convert lumi methylumi
12.2 years ago Allegra Petti ▴ 120
0
votes
0
replies
1.7k
views
Create a sample file /tab delimited file in QuasR
BSgenome convert BSgenome QuasR BSgenome convert BSgenome QuasR
12.2 years ago Guest User ★ 13k
0
votes
0
replies
1.1k
views
Error in heatmapSig function
HTqPCR HTqPCR
12.2 years ago Guest User ★ 13k
0
votes
2
replies
980
views
combine the values from two column into one
updated 12.2 years ago by ★ 11k • written 12.2 years ago by ▴ 80
0
votes
0
replies
907
views
Problem with the oligo package for nimblegen analysis
12.2 years ago Guest User ★ 13k
0
votes
2
replies
1.2k
views
setting names of GAlignmentsList objects
updated 12.2 years ago by 25k • written 12.2 years ago by ▴ 330
0
votes
3
replies
3.9k
views
Working with ensembl 73 & BSGenome
Annotation BSgenome TranscriptDb biomaRt BSgenome Annotation BSgenome TranscriptDb biomaRt
updated 12.2 years ago by 16k • written 12.2 years ago by ★ 13k
0
votes
0
replies
1.1k
views
European Developers' Meeting 2013
12.2 years ago Jonathan Cairns ▴ 60
0
votes
0
replies
1.3k
views
FW: About your motifStack package
motifStack motifStack
12.2 years ago Ou, Jianhong ★ 1.3k
0
votes
2
replies
1.2k
views
Problem with topTable function (after Bioconductor update)
updated 12.2 years ago by 68k • written 12.2 years ago by ▴ 150
0
votes
0
replies
1.1k
views
About your motifStack package
motifStack motifStack
12.2 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
1.1k
views
flowCore: troubles reading FCS files from Calibur
flowCore flowCore
12.2 years ago Anja Mirenska ▴ 10
46,699 results • Page 520 of 934
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Answer: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP by victor04052024 • 0
You write quite well, and the content is very interesting. I'll provide you a link to my page [granny 2](https://granny2.io).
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by victor04052024 • 0
The information is interesting, and your writing is excellent. I will provide you a link to my website [Baseball bros](https://baseball-gam…
Comment: segfault in edgeR glmQLFit by Gordon Smyth 53k
We have committed a bug fix now to edgeR on both the release and developmental Bioconductor repositories.
Answer: Ensembl site unresponsive via biomaRt by horaortiz8 • 0
I appreciate the link. I'll get in touch with them directly; I wish they had a status page of some kind. https://www.ensembl.org/Help/Cont…
Comment: segfault in edgeR glmQLFit by Mark • 0
Thanks! We had been considering some of these adjustments as well, given the small number of features and total reads. Your advice is well-…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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