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problem with frma on U133AAofAv2 platform
probe
frma
probe
frma
updated 14.2 years ago by
Matthew McCall
▴ 830 • written 14.2 years ago by
Wang,Ying
▴ 20
0
votes
2
replies
1.5k
views
VanillaICE
Proteomics
VanillaICE
Proteomics
VanillaICE
updated 14.2 years ago by
Valerie Obenchain
★ 6.8k • written 14.2 years ago by
Francesco Mancuso
▴ 110
0
votes
3
replies
1.7k
views
readPileup() Error
updated 14.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.2 years ago by
Ron Ophir
▴ 60
0
votes
3
replies
1.8k
views
Normalization in Coverage
Coverage
Normalization
Coverage
Normalization
14.2 years ago
rohan bareja
▴ 200
0
votes
2
replies
1.2k
views
visualizing genomic data
updated 14.2 years ago by
Tengfei Yin
▴ 420 • written 14.2 years ago by
Bogdan
▴ 670
0
votes
0
replies
1.2k
views
[ChIPpeakAnno] - What's the "annotatePeakInBatch" function expected running time ?
AnnotationData
AnnotationData
14.2 years ago
Halian Vilela
▴ 50
0
votes
2
replies
1.7k
views
error in loading GLAD package
GLAD
GLAD
updated 14.2 years ago by
Martin Morgan
25k • written 14.2 years ago by
Qian Liu
▴ 110
0
votes
1
reply
3.6k
views
Multiple groups comparison using EdgeR
edgeR
edgeR
14.2 years ago
Xiaohui Wu
▴ 280
0
votes
0
replies
1.0k
views
topGO using de novo assembled transcriptome
Microarray
topGO
Microarray
topGO
14.2 years ago
oystercow
▴ 20
0
votes
9
replies
3.0k
views
Attribute in snp mart to get SNP function (e.g. synonymous, nonsynonymous) ?
SNP
biomaRt
SNP
biomaRt
updated 14.2 years ago by
Valerie Obenchain
★ 6.8k • written 14.2 years ago by
Adriana Munoz
▴ 100
0
votes
0
replies
739
views
how to remove redundant or error in transcripsome
14.2 years ago
wang peter
★ 2.0k
0
votes
3
replies
2.2k
views
Repitools/ClusterPlots
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
updated 14.2 years ago by
Chao-Jen Wong
▴ 580 • written 14.2 years ago by
Guest User
★ 13k
0
votes
2
replies
1.6k
views
edgeR and pair-wise comparison error by estimateGLMCommonDisp
edgeR
edgeR
updated 14.2 years ago by
Gordon Smyth
53k • written 14.2 years ago by
Guest User
★ 13k
0
votes
6
replies
2.9k
views
Rsamtools installation
Rsamtools
Rsamtools
updated 14.2 years ago by
James W. MacDonald
68k • written 14.2 years ago by
John Coulthard
▴ 170
0
votes
4
replies
1.5k
views
IlluminaHumanMethylation450k.db Reference Versions
14.2 years ago
Dario Strbenac
★ 1.6k
0
votes
2
replies
1.1k
views
installation problems with goseq
PROcess
PROcess
updated 14.2 years ago by
Martin Morgan
25k • written 14.2 years ago by
Claudia Calabrese
▴ 20
0
votes
1
reply
1.3k
views
GenomicRanges Use Cases - subsetByOverlaps
updated 14.2 years ago by
Steve Lianoglou
★ 13k • written 14.2 years ago by
James Perkins
▴ 120
0
votes
1
reply
1.8k
views
CRAN packages maintained by you
hexbin
gpls
RBGL
impute
Icens
hopach
maanova
RLMM
CORREP
cycle
hexbin
gpls
RBGL
Icens
updated 14.2 years ago by
Nicholas Lewin-Koh
▴ 430 • written 14.2 years ago by
Kurt Hornik
▴ 10
0
votes
4
replies
2.0k
views
GenomicFeatures makeTranscriptDbFromBiomart failure
TranscriptDb
biomaRt
TranscriptDb
biomaRt
updated 14.2 years ago by
Michael Lawrence
★ 11k • written 14.2 years ago by
Tim Rayner
▴ 270
0
votes
3
replies
2.5k
views
RNAseq expression analysis using DESeq: technical replicates, paired samples
RNASeq
DESeq
RNASeq
DESeq
updated 14.2 years ago by
Simon Anders
★ 3.8k • written 14.2 years ago by
Michael Muratet
▴ 420
0
votes
9
replies
4.7k
views
problem with using GSVA package
GSVA
GSVA
updated 14.2 years ago by
Robert Castelo
★ 3.4k • written 14.2 years ago by
Wendy Qiao
▴ 360
0
votes
0
replies
836
views
remove affy probes with common SNPs
14.2 years ago
Joao Fadista
▴ 40
0
votes
3
replies
1.9k
views
Correlation analysis
Microbiome
HIV
Microbiome
HIV
updated 14.2 years ago by
Sean Davis
21k • written 14.2 years ago by
Minh Bui
▴ 20
0
votes
1
reply
883
views
meta analysis
SNP
SNP
14.2 years ago
Joao Fadista
▴ 40
0
votes
1
reply
1.2k
views
the procedure to annotate assembled transcriptom
annotate
genomes
annotate
genomes
updated 14.2 years ago by
Sean Davis
21k • written 14.2 years ago by
wang peter
★ 2.0k
0
votes
11
replies
3.3k
views
NucleR: processReads/solveUserSEW0 - Error
IRanges
ShortRead
nucleR
IRanges
ShortRead
nucleR
14.2 years ago
Stefanie Ververs
▴ 70
0
votes
6
replies
2.2k
views
Bioconductor, PHP, and R
updated 14.2 years ago by
Dan Tenenbaum
★ 8.2k • written 14.2 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
ChIPpeakAnno, makeVennDiagram
Transcription
ChIPpeakAnno
Transcription
ChIPpeakAnno
14.2 years ago
Julie Zhu
★ 4.3k
1
vote
1
reply
6.2k
views
How to extract Phenotype data from GSE
GEOquery
GEOquery
updated 14.2 years ago by
James F. Reid
▴ 610 • written 14.2 years ago by
Reema Singh
▴ 570
0
votes
1
reply
997
views
edd deprecation
updated 14.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.2 years ago by
Tim Rayner
▴ 270
0
votes
5
replies
6.0k
views
Convert gene expression matrix to ExpressionSet
GSVA
GSVA
updated 14.2 years ago by
Martin Morgan
25k • written 14.2 years ago by
Wendy Qiao
▴ 360
0
votes
1
reply
2.3k
views
phenodata GEOquery query
updated 14.2 years ago by
Sean Davis
21k • written 14.2 years ago by
Reema Singh
▴ 570
0
votes
0
replies
1.6k
views
objective criterion for identification of outlying arrays by pca
Network
Bayesian
Cancer
Network
Bayesian
Cancer
14.2 years ago
shirley zhang
★ 1.0k
0
votes
1
reply
1.8k
views
Does liftOver work for SNPs mapping to different chr between different builds
SNP
GO
Cancer
SNPlocs
rtracklayer
SNP
GO
Cancer
SNPlocs
rtracklayer
updated 14.2 years ago by
Michael Lawrence
★ 11k • written 14.2 years ago by
shirley zhang
★ 1.0k
0
votes
4
replies
2.3k
views
gene enrichment analysis without a control sample
Microarray
Microarray
14.2 years ago
Wendy Qiao
▴ 360
0
votes
1
reply
1.0k
views
downloading GO from biomart through bioconductor
GO
biomaRt
GO
biomaRt
updated 14.2 years ago by
Marc Carlson
★ 7.2k • written 14.2 years ago by
Brian Tsai
▴ 40
0
votes
0
replies
760
views
illuminaHumanv4 mappings
probe
probe
14.2 years ago
Valerie Deffontaine
▴ 10
0
votes
1
reply
2.1k
views
edgeR for miRNA
edgeR
edgeR
updated 14.2 years ago by
Mark Robinson
▴ 880 • written 14.2 years ago by
Lana Schaffer
★ 1.3k
0
votes
0
replies
881
views
problem in normalizing single channel gar file
Microarray
Normalization
Microarray
Normalization
14.2 years ago
Niraj Nepal
▴ 20
0
votes
0
replies
788
views
minfi F-test Results
14.2 years ago
Dario Strbenac
★ 1.6k
0
votes
1
reply
950
views
DESeq -SCVplot
updated 14.2 years ago by
Wolfgang Huber
★ 13k • written 14.2 years ago by
Dawei Li
▴ 50
0
votes
1
reply
1.8k
views
Packages reproducing phylogenetic tree from output of MEGA
updated 14.2 years ago by
Ron Ophir
▴ 60 • written 14.2 years ago by
Dejian Zhao
▴ 10
0
votes
0
replies
1.5k
views
Bioinformatics/biostatistics position at the Institute of Cancer Research, UK
Sequencing
Microarray
Genetics
Cancer
Sequencing
Microarray
Genetics
Cancer
14.2 years ago
Daniel Brewer
★ 1.9k
0
votes
4
replies
1.5k
views
MA plots for large number of arrays
affy
affyPLM
beadarray
lumi
affy
affyPLM
beadarray
lumi
updated 14.2 years ago by
boczniak767
▴ 740 • written 14.2 years ago by
Juliet Hannah
▴ 360
0
votes
0
replies
939
views
Predicted overlaps of 3 gene lists
14.2 years ago
Edwin Groot
▴ 230
0
votes
3
replies
1.2k
views
Extracting variant nucleotides
updated 14.2 years ago by
Michael Lawrence
★ 11k • written 14.2 years ago by
Alpesh Querer
▴ 220
0
votes
0
replies
819
views
R/Bioc workshops on Dec 8-12 at UC Riverside
Visualization
Visualization
14.2 years ago
Thomas Girke
★ 1.7k
0
votes
2
replies
1.6k
views
lumi: Methylation450 Data Input
lumi
lumi
updated 14.2 years ago by
Chao-Jen Wong
▴ 580 • written 14.2 years ago by
Jiayi Sun
▴ 40
0
votes
0
replies
1.6k
views
Use of glm for multivariate logistic regression of microarray data
Microarray
Regression
Microarray
Regression
14.2 years ago
Ruppert Valentino
▴ 270
0
votes
1
reply
1.4k
views
goSeq error
Cancer
PROcess
edgeR
goseq
ASSIGN
Cancer
PROcess
edgeR
goseq
ASSIGN
14.2 years ago
Matthew Young
▴ 50
46,714 results • Page
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Comment: Incosistencies in buildSNNGraph() function
by
ATpoint
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Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function
by
Aaron Lun
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The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops!
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• 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Votes
Answer: Incosistencies in buildSNNGraph() function
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Bioconductor Maintainer Application
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