0
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1
reply
3.0k
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How to download multiple packages
GO GO
updated 16.7 years ago by ▴ 160 • written 16.7 years ago by ▴ 150
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updated 16.7 years ago by ▴ 150 • written 16.7 years ago by ▴ 430
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updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 40
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limma separate channel analysis: extremely low consensus intraspotcorrelation
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16.7 years ago Thierry Janssens ▴ 40
0
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1.4k
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Cannot install GO & KEGG
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updated 16.7 years ago by ★ 5.5k • written 16.7 years ago by ▴ 90
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Subject: Re: Normalization of arrays where most of the genes change
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16.7 years ago Alicia Oshlack ▴ 70
0
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826
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limma: is layout really necessary for non-printtip normalization?
16.7 years ago Michael Lawrence ▴ 620
0
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4
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updated 16.7 years ago by ▴ 620 • written 16.7 years ago by ★ 6.5k
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microRNA Agilent normalization
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16.7 years ago Pedro Lopez-Romero ▴ 120
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997
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Error using summary method on GOHyperGResult object
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updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 350
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running MBEI (PM-MM) using expresso
updated 16.7 years ago by 68k • written 16.7 years ago by ▴ 840
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1.3k
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http://www.bioconductor.org not online
updated 16.7 years ago by ▴ 340 • written 16.7 years ago by ★ 13k
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0
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problems loading imagene data with limma
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16.7 years ago Ingunn Berget ▴ 150
0
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4
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Venn Diagram of 4 Sets
updated 16.7 years ago by ★ 1.7k • written 16.7 years ago by ▴ 750
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1
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Axes in Volcano Plots
updated 16.7 years ago by ★ 13k • written 16.7 years ago by ▴ 750
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readFASTA Arguments
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updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 40
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826
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CDF packages
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updated 16.7 years ago by 68k • written 16.7 years ago by ▴ 80
0
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0
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844
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June R/Splus Courses: Nationwide Back2back (1) R/S+ Fundamentals and (2) R/S-Plus Advanced Programming. in San Francisco, New York City, Boston, Wash…
16.7 years ago sue@xlsolutions-corp.com ▴ 570
0
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0
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650
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changes in GeneAnnot custom CDF annotation packages
Annotation Annotation
16.7 years ago Francesco Ferrari ▴ 10
0
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2
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1.3k
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intraSpotCorrelation consensus values for Single Channel analysis in limma
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updated 16.7 years ago by ★ 2.0k • written 16.7 years ago by ▴ 40
0
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1
reply
1.1k
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paired t-test
updated 16.7 years ago by 68k • written 16.7 years ago by ▴ 320
0
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1
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1.6k
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Agilent duplicate spots and multiple probes per gene
limma limma
updated 16.7 years ago by ▴ 100 • written 16.7 years ago by ▴ 210
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3
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Problem with hyperGTest using ath1121501.db
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16.7 years ago Ulrike Goebel ▴ 110
0
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2
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1.1k
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Normalization of arrays where most of the genes change
updated 16.7 years ago by 21k • written 16.7 years ago by ▴ 360
0
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0
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1.3k
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limma and technical rep dye-swaps
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16.7 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
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Question about using oligo and SNPchip for copy number analysis
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16.7 years ago Min-Han Tan ▴ 40
0
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3
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2.1k
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Can BioC still convert exprSet to ExpressionSet?
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updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 100
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2.0k
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snapCGH fails in runBioHMM
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updated 16.7 years ago by ▴ 160 • written 16.7 years ago by ★ 1.1k
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881
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Bioconductor Digest, Vol 75, Issue 12
updated 16.7 years ago by ▴ 810 • written 16.7 years ago by ▴ 10
0
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0
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News-Witness the REAL IMAGE of Quark-Gluon Plasma
GO GO
16.7 years ago ABSOLUTE PROJECT ▴ 10
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2
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Packages not getting installed
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1
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5
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Finding differentially expressed genes using Ebayes
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updated 16.7 years ago by 68k • written 16.7 years ago by ▴ 90
0
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3
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exon.pmcdf and mouseexon.pmcdf
updated 16.7 years ago by ▴ 190 • written 16.7 years ago by ▴ 80
0
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0
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limma design, 3 biological reps (two with a tech rep, one without)
Cancer limma Cancer limma
16.7 years ago Ryan Basom ▴ 20
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0
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Ensembl mart release 54: Useful information
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16.7 years ago Rhoda Kinsella ▴ 660
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KEGGSOAP: problem with get.pathways.by.genes()
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updated 16.7 years ago by ▴ 400 • written 16.7 years ago by ▴ 30
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A question on microarray timeseries data
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16.7 years ago Anjan Purkayastha ▴ 90
0
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11
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Upgrading R
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updated 16.7 years ago by ▴ 320 • written 16.7 years ago by ▴ 70
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820
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GOstat implementation for UHN12K chips
updated 16.7 years ago by 68k • written 16.7 years ago by ▴ 90
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limma - Identifying interactions
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updated 16.7 years ago by ▴ 60 • written 16.7 years ago by ▴ 20
0
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0
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Package gpls_1.16.0.tar.gz has been built for Windows
16.7 years ago Uwe.Ligges@r-project.org ▴ 120
0
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0
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Package Icens_1.16.0.tar.gz has been built for Windows
16.7 years ago Uwe.Ligges@r-project.org ▴ 120
0
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3
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2.1k
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readChp (affxparser) segfaults
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updated 16.7 years ago by ★ 6.5k • written 16.7 years ago by ▴ 60
0
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OutlierD package implementation
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16.7 years ago Ashwin Kumar ▴ 90
0
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2
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About Volcano Plot
oligo oligo
updated 16.7 years ago by ▴ 750 • written 16.7 years ago by ▴ 380
0
votes
2
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989
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Affy paeg1a (pseudomonas) annotation
updated 3.4 years ago by • 0 • written 16.7 years ago by ▴ 750
0
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2
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Yet another nested design in limma
affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova
updated 16.7 years ago by ▴ 320 • written 16.7 years ago by 53k
0
votes
0
replies
982
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increasing memory for R bg job
16.7 years ago carol white ▴ 680
0
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3
replies
2.6k
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KEGGgraph: gene ids for nodes in a pathway
KEGGgraph KEGGgraph
updated 16.7 years ago by ▴ 340 • written 16.7 years ago by ★ 1.1k
0
votes
0
replies
805
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function log2ratios() missing in snapCGH ?
16.7 years ago Winfried Hofmann ▴ 10
46,723 results • Page 713 of 935
Recent ...
Replies
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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