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Advanced Course in Analysis of Short Read Sequencing Data
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error message from bioMart
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(CRLMM) an issue needs to be clarified
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16.9 years ago Ping-Hsun Hsieh ▴ 30
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question about QCReport
updated 16.9 years ago by ▴ 450 • written 16.9 years ago by ▴ 130
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Error in as.vector(x, mode)
updated 16.9 years ago by 68k • written 16.9 years ago by ▴ 20
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Convert KEGGpathway to nuID in lumi
updated 16.9 years ago by 25k • written 16.9 years ago by ▴ 640
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Missing code in Lumi package Vignette
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Heatmap hints and identifying differentially expressed genes
updated 16.9 years ago by 21k • written 16.9 years ago by ▴ 40
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Help on: Resizing the plot of a dendrogram when plotting clusters
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Cannot find MoGene-1.0
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updated 16.9 years ago by ▴ 200 • written 16.9 years ago by ▴ 300
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updated 16.9 years ago by ★ 6.5k • written 16.9 years ago by ▴ 350
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16.9 years ago Daren Tan ▴ 120
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16.9 years ago dhaarini s ▴ 70
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script line to multiply a vector by another vector or matrix
updated 16.9 years ago by ★ 1.6k • written 16.9 years ago by ▴ 680
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problem regarding runtime of pamr.cv
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Installing xps on Mac OS 10.4.11.
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updated 16.9 years ago by ★ 3.9k • written 16.9 years ago by ▴ 750
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updated 16.9 years ago by ★ 1.2k • written 16.9 years ago by ▴ 640
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Error in assign while calling the vmatchPattern function
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biomart package - error querying for ensembl gene ID in snp mart
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PhD / PostDoc positions in Innsbruck, Austria
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16.9 years ago Johannes Rainer ▴ 80
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biomart package - error querying for ensembl gene ID in snp mart
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16.9 years ago martin sikora ▴ 60
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limma - interpreting factorial design
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updated 16.9 years ago by ▴ 250 • written 16.9 years ago by ▴ 810
46,723 results • Page 721 of 935
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Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
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A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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