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1
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1.3k
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Limma: NaNs in intraspotCorrelation()
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17.4 years ago John Lande ▴ 280
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Array quality question
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868
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DNASuffixArray
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851
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Affymetrix rhesus chip annotation file?
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0
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2
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1.4k
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Hierarchical clustering of RMA data
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limma background correction
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updated 17.4 years ago by 53k • written 17.4 years ago by ▴ 340
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5
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errors with attempted installation of package affxparser
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2
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Importing "Detailed sample annotation" from ArrayExpress DB into R
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17.4 years ago Markus Schmidberger ▴ 380
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Project Enquiry!
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17.4 years ago Kat ▴ 20
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query about RNA degradation plot
updated 17.4 years ago by ★ 2.0k • written 17.4 years ago by ▴ 80
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1
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codelink analysis
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updated 17.4 years ago by ▴ 760 • written 17.4 years ago by ▴ 10
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LumiBatch - Error in creating lumi object
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Illumina BeadChips and beadarray
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17.4 years ago Matt Ritchie ▴ 460
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7
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Illumina BeadChips and beadarray
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updated 17.4 years ago by ▴ 460 • written 17.4 years ago by ▴ 620
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1
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1.6k
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DNAString: Error for long sequences
GO GO
updated 17.4 years ago by 25k • written 17.4 years ago by ▴ 340
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Cluster and classification research ggrad students
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17.4 years ago William Shannon ▴ 280
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3
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How to use CRLMM with Affy 5.0 arrays
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updated 17.4 years ago by ★ 4.3k • written 17.4 years ago by ▴ 20
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suggest permutation methods
17.4 years ago Paul Leo ▴ 970
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problem with makePDpackage, geometry issue
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17.4 years ago Brian Herb ▴ 80
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1
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Error in X11(paste("png::", filename, sep = ""),
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updated 17.4 years ago by ★ 2.4k • written 17.4 years ago by ▴ 200
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2
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"start" filter in biomaRt
17.4 years ago Shi, Tao ▴ 720
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2
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6
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similarity between two gene lists with varied length
updated 17.4 years ago by ▴ 60 • written 17.4 years ago by ★ 1.2k
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9
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GO over representation analysis
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similarity between two gene lists with varied length
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CSIE 2009, Los Angeles, Submissions: September 30
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How to extract log ratios from two color arrays
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17.4 years ago Heike Pospisil ▴ 310
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0
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boxplot of subset of PLMset
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0
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Agilent time course with technical replicates, differential expression using Limma
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transcript numbers
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ANNOUNCEMENT: 20% Discount on Books from Chapman & Hall/CRC!
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Understanding the randomness of Biomart
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biomaRt question -- not getting a gene
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4
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filtering Illumina data
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exonmap question: rma (& plier ) crashes conti.
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question about biomaRt attributes
biomaRt biomaRt
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0
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RSQLite installation question
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Problem reading quantarray files
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Agilent MAGE-ML
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0
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Two cDNA arrays whose samples are the same but probes are not
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0
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exonmap question: rma (& plier) crashes
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updated 17.4 years ago by ★ 1.1k • written 17.4 years ago by ▴ 70
0
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errors usage of local biomart database with biomaRt package
Annotation biomaRt Annotation biomaRt
17.4 years ago Faheem Mitha ▴ 20
0
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HELP package
updated 17.4 years ago by ★ 2.4k • written 17.4 years ago by ▴ 220
46,719 results • Page 741 of 935
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Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k
Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
Comment: Error in creating BSGenome package by Nguyen • 0
I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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