0
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0
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911
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Re: RMA vs VSN
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21.6 years ago Wolfgang Huber ★ 13k
0
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2
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updated 21.6 years ago by 53k • written 21.6 years ago by ▴ 940
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966
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21.6 years ago James Wettenhall ▴ 1000
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1.3k
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loading CEL files in affylmGUI
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updated 21.6 years ago by ▴ 1000 • written 21.6 years ago by ▴ 60
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Regarding Tcltk and CDF error
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updated 21.6 years ago by ▴ 1000 • written 21.6 years ago by ★ 1.1k
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updated 21.6 years ago by ▴ 630 • written 21.6 years ago by ★ 1.1k
0
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1
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1.1k
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DNA, not RNA: motif mining
updated 21.6 years ago by ▴ 60 • written 21.6 years ago by ▴ 50
0
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0
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778
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marray on R 1.9.1
21.6 years ago nataraja@mit.edu ▴ 30
0
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1
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858
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Error Installing Rgraphviz
updated 21.6 years ago by ★ 3.9k • written 21.6 years ago by ▴ 80
0
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0
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734
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correction in my tcltk and CDF error question........
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21.6 years ago SAURIN ★ 1.1k
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2
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limma prior
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21.6 years ago SAURIN ★ 1.1k
0
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1
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952
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Error when using spacialLayout in package arrayMagic
updated 21.6 years ago by ▴ 40 • written 21.6 years ago by ▴ 30
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3
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updated 21.6 years ago by ▴ 1000 • written 21.6 years ago by ▴ 340
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1.0k
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large data set under 32 bits architecture
GO affy gcrma GO affy gcrma
updated 21.6 years ago by ▴ 680 • written 21.6 years ago by ▴ 720
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6
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21.6 years ago Roger Vallejo ▴ 120
0
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affy installation problem
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21.6 years ago Claudio Lottaz ▴ 110
0
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21.6 years ago SAURIN ★ 1.1k
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0
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21.6 years ago SAURIN ★ 1.1k
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limmaGUI and dupcor.series error
limmaGUI limmaGUI
updated 21.6 years ago by ▴ 1000 • written 21.6 years ago by ▴ 760
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how to install packages of older version?
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updated 21.6 years ago by ★ 3.9k • written 21.6 years ago by ▴ 10
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NIH/NIST Joint Postdoc
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21.6 years ago Marc Salit ▴ 80
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folate pathway is missing a key gene, MTHFR
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updated 21.6 years ago by ★ 2.9k • written 21.6 years ago by ▴ 70
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21.6 years ago MOConnell@insightful.com ▴ 20
0
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PhD studentships at EBI
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21.6 years ago Wolfgang Huber ★ 13k
0
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limma/multtest comparison question
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21.6 years ago Sean Davis 21k
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3
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gcrma()/rma() error
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21.6 years ago Michael Seewald ▴ 130
0
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0
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plot.ProbeSet
21.6 years ago Chang, Kai-Ming ▴ 20
0
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1
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New package
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21.6 years ago Jeff Gentry ★ 3.9k
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win 64bit and general BioC computing power?
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updated 21.6 years ago by ▴ 360 • written 21.6 years ago by ▴ 940
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1
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Expression on different Affy arrays
moe430a probe moe430a probe
updated 21.6 years ago by ▴ 220 • written 21.6 years ago by ▴ 70
0
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0
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936
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Apologies for typo
21.6 years ago Stephen Moore ▴ 70
0
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1
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912
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updated 21.6 years ago by ★ 1.8k • written 21.6 years ago by ▴ 70
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21.6 years ago Phguardiol@aol.com ▴ 720
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1
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old versions of bioconductor packages
updated 21.6 years ago by ★ 3.9k • written 21.6 years ago by ▴ 50
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1
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annotating imprinted genes?
Annotation Annotation
updated 21.6 years ago by 21k • written 21.6 years ago by ▴ 50
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0
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21.6 years ago Sean Davis 21k
0
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0
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21.6 years ago Claudio Lottaz ▴ 110
0
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3
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updated 21.6 years ago by ★ 3.4k • written 21.6 years ago by ▴ 10
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Re: matchprobes vignette?
probe Biobase matchprobes probe Biobase matchprobes
updated 21.6 years ago by ▴ 130 • written 21.6 years ago by ★ 5.5k
0
votes
0
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21.6 years ago Anthony Bosco ▴ 500
0
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0
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21.6 years ago Simon Kidd ▴ 180
0
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10
replies
2.3k
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(no subject)
updated 21.6 years ago by ▴ 180 • written 21.6 years ago by ▴ 300
0
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7
replies
1.8k
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matchprobes vignette?
probe Biobase matchprobes probe Biobase matchprobes
updated 21.6 years ago by ★ 3.9k • written 21.6 years ago by ▴ 130
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How to put out the normalization result of limma as a *.txt file?
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updated 21.6 years ago by ▴ 130 • written 21.6 years ago by 21k
0
votes
0
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781
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June 28-29 Bioconductor Training Boston: Last call for registrations
21.6 years ago Vincent J. Carey, Jr. 6.7k
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1
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affy 1 cycle vs 2 cycle labeling kit
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updated 21.6 years ago by ▴ 130 • written 21.6 years ago by ▴ 140
0
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0
replies
1.6k
views
Problems with aCGH package
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21.6 years ago grischa tödt ▴ 30
0
votes
1
reply
1.7k
views
How to import the original data into knncat?
updated 21.6 years ago by 21k • written 21.6 years ago by ▴ 120
46,725 results • Page 891 of 935
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
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The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
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I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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