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56
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Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets
allele_freq
biomaRt
getBM
7 days ago • updated 6 days ago
Abiologist
• 0
0
votes
0
replies
46
views
scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
RNASeq
scRNAseq
6 days ago
Bibi
• 0
0
votes
0
replies
40
views
Processing of curatedmetagenomics
curatedMetagenomicData
5 days ago
Edward
• 0
0
votes
0
replies
12
views
Spam:
Understanding Laser Hair Removal?
healthyControlsPresenceChecker
5 days ago
shahrozimmac
0
0
votes
2
replies
762
views
Help with ENmix readidat
ENmix
IlluminaHumanMethylationEPICmanifest
updated 4 days ago by
James W. MacDonald
66k • written 2.0 years ago by
Daphna
• 0
0
votes
2
replies
236
views
Visium RNA
metaMSdata
written 9 weeks ago by
Karlison
• 0
4
votes
3
replies
1.0k
views
BayesSpace parameters for DLPFC Visium data
BayesSpace
written 3.1 years ago by
aspangl1
▴ 30
0
votes
0
replies
37
views
Conditional analysis
GENESIS
4 days ago
SuperDad
• 0
0
votes
1
reply
733
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
updated 4 days ago by
baptiste.bidon
• 0 • written 4.8 years ago by
ag1805x
▴ 80
0
votes
0
replies
39
views
FindOverlaps, makeVennDiagram and "others"
ATACSeq
peaks
ATAC
ChIPpeakAnno
4 days ago
Raghad
• 0
0
votes
7
replies
349
views
ChAMP installation issue
Cha
ChAMP
updated 3 days ago by
James W. MacDonald
66k • written 12 days ago by
e1271094
• 0
0
votes
0
replies
31
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor
dada2
3 days ago • updated 2 days ago
abhisek001
• 0
0
votes
4
replies
229
views
Using featureCounts with SAF annotation file gives "Error: only GTF files contain additional attributes"
RNASeq
Rsubread
updated 1 day ago by
Wei Shi
★ 3.6k • written 2 days ago by
atan
• 0
0
votes
4
replies
79
views
Cannot install oligo on Fedora
oligo
source
Install
updated 20 hours ago by
James W. MacDonald
66k • written 1 day ago by
Guido Hooiveld
★ 4.0k
1
vote
4
replies
1.6k
views
conumee with Infinium MethylationEPIC v2.0
MethylationEPICv2.0
conumee
updated 7 hours ago by
Maximus
• 0 • written 14 months ago by
luca.s
▴ 50
0
votes
0
replies
14
views
conumee with Infinium MethylationEPIC v2.0
conumee
7 hours ago
Maximus
• 0
16 results • Page
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Comment: conumee with Infinium MethylationEPIC v2.0
by
Maximus
• 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
• 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Answer: GSVA function
by
Robert Castelo
★ 3.3k
Hi, We recommend to input normalized expression values in logarithmic scale to GSVA. We also recommend to use the latest release of the …
Votes
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DESeq2: add annotations (from data frame) to DESeqDataSet
Add new columns to DESeqResults from text file by matching rownames.
DESeq2: LRT or WALD guidance
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kevin.rue
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Wei Shi
★ 3.6k
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