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Comment: gds in GEOmetadb 2023-06-26 version is empty
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Try
axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
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James W. MacDonald
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The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
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You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
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adripel
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0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
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For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
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