Showing : AgiMicroRna • reset
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Unable to use the function named read.agiMicroRna()
AgiMicroRna
updated 4.4 years ago by 65k • written 4.4 years ago by ▴ 10
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2
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1.0k
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covert from RGList to uRNAList
agilent agimicrorna
updated 5.4 years ago by 50k • written 5.4 years ago by ▴ 30
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problems in reading a file in AgiMicroRna package
agimicrorna read.agimicrorna agilent microarrays
updated 6.5 years ago by ★ 1.0k • written 6.6 years ago by • 0
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Package: AgiMicroRna; Error in Loading the file
AgiMicroRna
6.6 years ago neelakandanbt • 0
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997
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AgiMicroRna_Error in xy.coords(x, y) : 'x' and 'y' lengths differ(tgsNormalization)
AgimicroRNA
7.6 years ago cpsingh9 • 0
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1.1k
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Inappropriate Statistical Models for Agilent microRNA Microarray Data
agimicrorna linear model
8.1 years ago Dario Strbenac ★ 1.5k
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AgiMicroRna for new Agilent Chip format
Microarray GO limma PROcess microRNA AgiMicroRna Microarray GO limma PROcess microRNA
11.2 years ago Gordon Smyth 50k
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AgiMicroRna for new Agilent Chip format - columns gTotalGeneSignal and gTotalProbeSignal missing
GO AgiMicroRna GO AgiMicroRna
updated 11.2 years ago by ★ 1.0k • written 11.2 years ago by ★ 13k
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Agilent Chip G4858A-039494: columns gTotalGeneSignal, gTotalProbeSignal missing for AgiMicroRna
GO AgiMicroRna GO AgiMicroRna
11.2 years ago Guest User ★ 13k
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segmentation fault in rma.background.correct()
GO Preprocessing AgiMicroRna GO Preprocessing AgiMicroRna
11.7 years ago Axel Klenk ★ 1.0k
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4
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1.7k
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Should AgiMicroRna and GeneSpring quantile normalisation be the same ?
Normalization GeneSpring microRNA AgiMicroRna Normalization GeneSpring microRNA AgiMicroRna
updated 11.7 years ago by ★ 1.3k • written 11.7 years ago by ▴ 30
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Access to Source Codes of Packges
limma AgiMicroRna limma AgiMicroRna
updated 11.9 years ago by 21k • written 11.9 years ago by ▴ 200
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6
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1.3k
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AgiMicroRna and Replicates
AgiMicroRna AgiMicroRna
updated 11.9 years ago by ★ 13k • written 11.9 years ago by ▴ 200
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Issues with AgiMicroRna filtering step (Error in is(ddNORM, "uRNAList") : object 'ddNORM' not found)
probe AgiMicroRna probe AgiMicroRna
12.2 years ago Karthik K N ▴ 200
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6
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1.5k
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Important: Help with eBayes in AgiMicrRna and on how to find differentially expressed genes
bgx AgiMicroRna bgx AgiMicroRna
updated 12.2 years ago by ▴ 60 • written 12.2 years ago by ▴ 200
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792
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Installing AgiMicroRna Package
AgiMicroRna AgiMicroRna
updated 12.2 years ago by 25k • written 12.2 years ago by ▴ 200
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813
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filterMicroRna function of AgiMicroRna for filtering by sample replicates
probe microRNA AgiMicroRna probe microRNA AgiMicroRna
12.8 years ago Viki S ▴ 20
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3
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1.5k
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AgiMicroRna with single channel Agilent Array
AgiMicroRna AgiMicroRna
12.8 years ago John Lande ▴ 280
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977
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Limma - batch issues
miRNA Microarray limma PROcess AgiMicroRna miRNA Microarray limma PROcess AgiMicroRna
12.8 years ago Segal, Corrinne ▴ 40
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ProbeNames are not matching miR names in RMA-normalized data with AgiMicroRna
miRNA Microarray Normalization AgiMicroRna miRNA Microarray Normalization AgiMicroRna
13.2 years ago Paola Ostano ▴ 10
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1.2k
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AgiMicroRna problem
Annotation microRNA AgiMicroRna Annotation microRNA AgiMicroRna
updated 13.2 years ago by ▴ 200 • written 13.2 years ago by ▴ 120
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4
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1.6k
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Loading data into AgiMicroRna
AgiMicroRna AgiMicroRna
updated 13.6 years ago by ▴ 460 • written 13.6 years ago by ▴ 280
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3
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1.2k
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AgiMicroRna problems
miRNA Normalization FeatureExtraction PROcess microRNA AgiMicroRna miRNA Normalization
updated 13.6 years ago by ▴ 230 • written 13.6 years ago by ▴ 910
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8
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1.8k
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AgiMicroRna problems
Normalization PROcess microRNA AgiMicroRna Normalization PROcess microRNA AgiMicroRna
13.6 years ago Mark Cowley ▴ 910
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1.1k
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Agi4x44PreProcess
GUI zebrafish probe AgiMicroRna GUI zebrafish probe AgiMicroRna
13.6 years ago Neel Aluru ▴ 460
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1
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1.2k
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AgiMicroRna and readMicroRnaFE
miRNA AgiMicroRna miRNA AgiMicroRna
updated 13.7 years ago by ★ 2.0k • written 13.7 years ago by ▴ 200
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4
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1.3k
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Model variable optimisation
Regression probe limma AgiMicroRna Regression probe limma AgiMicroRna
updated 13.8 years ago by ▴ 330 • written 13.8 years ago by ▴ 60
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723
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AgiMicroRna and ComBat
miRNA probe AgiMicroRna miRNA probe AgiMicroRna
13.8 years ago Segal, Corrinne ▴ 40
0
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1
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849
views
AgiMicroRna package error message
Normalization microRNA AgiMicroRna Normalization microRNA AgiMicroRna
13.9 years ago Wang, Yonghong NIH/NCI ▴ 60
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1
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1.0k
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Error message with rmaMicroRna on mouse data in AgiMicroRNA
Cancer probe AgiMicroRna Cancer probe AgiMicroRna
updated 13.9 years ago by ▴ 360 • written 13.9 years ago by ★ 2.0k
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690
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mvaPlots of RMA normalized data in AgiMicroRNA
Cancer AgiMicroRna Cancer AgiMicroRna
13.9 years ago Richard Friedman ★ 2.0k
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0
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1.4k
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AgiMicroRna - FilterMicroRna and SignificantMicroRna function
miRNA zebrafish probe AgiMicroRna miRNA zebrafish probe AgiMicroRna
13.9 years ago Neel Aluru ▴ 460
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1
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1.1k
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segfault with rmaMicroRna in AgiMicroRna package
PROcess AgiMicroRna PROcess AgiMicroRna
updated 14.0 years ago by ★ 7.4k • written 14.0 years ago by ▴ 360
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1.3k
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AgiMicroRna package is not available at bioconductor or not in active form???
Microarray Network microRNA AgiMicroRna Microarray Network microRNA AgiMicroRna
updated 14.1 years ago by ▴ 60 • written 14.1 years ago by 21k
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6
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1.8k
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Normalisation of Agilent microRNA arrays using inbuilt controls?
GO Cancer vsn AgiMicroRna GO Cancer vsn AgiMicroRna
updated 14.2 years ago by ★ 3.6k • written 14.2 years ago by ★ 1.9k
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3
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1.2k
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Agilent Array Analysis Question
affy limma Agi4x44PreProcess AgiMicroRna affy limma Agi4x44PreProcess AgiMicroRna
updated 14.4 years ago by ★ 1.3k • written 14.4 years ago by ▴ 350
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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