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AgiMicroRna
•
reset
0
votes
8
replies
1.8k
views
AgiMicroRna problems
Normalization
PROcess
microRNA
AgiMicroRna
Normalization
PROcess
microRNA
AgiMicroRna
13.6 years ago
Mark Cowley
▴ 910
0
votes
6
replies
1.3k
views
AgiMicroRna and Replicates
AgiMicroRna
AgiMicroRna
updated 11.9 years ago by
Steve Lianoglou
★ 13k • written 11.9 years ago by
Karthik K N
▴ 200
0
votes
6
replies
1.8k
views
Normalisation of Agilent microRNA arrays using inbuilt controls?
GO
Cancer
vsn
AgiMicroRna
GO
Cancer
vsn
AgiMicroRna
updated 14.2 years ago by
Wei Shi
★ 3.6k • written 14.2 years ago by
Daniel Brewer
★ 1.9k
0
votes
6
replies
1.5k
views
Important: Help with eBayes in AgiMicrRna and on how to find differentially expressed genes
bgx
AgiMicroRna
bgx
AgiMicroRna
updated 12.3 years ago by
Lucas Santana dos Santos
▴ 60 • written 12.3 years ago by
Karthik K N
▴ 200
0
votes
4
replies
1.4k
views
Model variable optimisation
Regression
probe
limma
AgiMicroRna
Regression
probe
limma
AgiMicroRna
updated 13.8 years ago by
Steve Shen
▴ 330 • written 13.8 years ago by
Tony McBryan
▴ 60
0
votes
4
replies
1.7k
views
Should AgiMicroRna and GeneSpring quantile normalisation be the same ?
Normalization
GeneSpring
microRNA
AgiMicroRna
Normalization
GeneSpring
microRNA
AgiMicroRna
updated 11.7 years ago by
Paul Geeleher
★ 1.3k • written 11.7 years ago by
Seyit Ali KAYIS
▴ 30
0
votes
4
replies
1.6k
views
Loading data into AgiMicroRna
AgiMicroRna
AgiMicroRna
updated 13.6 years ago by
Neel Aluru
▴ 460 • written 13.6 years ago by
Steve Taylor
▴ 280
0
votes
3
replies
1.2k
views
Agilent Array Analysis Question
affy
limma
Agi4x44PreProcess
AgiMicroRna
affy
limma
Agi4x44PreProcess
AgiMicroRna
updated 14.5 years ago by
Francois Pepin
★ 1.3k • written 14.5 years ago by
Sunny Srivastava
▴ 350
0
votes
3
replies
2.7k
views
Access to Source Codes of Packges
limma
AgiMicroRna
limma
AgiMicroRna
updated 11.9 years ago by
Sean Davis
21k • written 11.9 years ago by
Karthik K N
▴ 200
0
votes
3
replies
1.5k
views
AgiMicroRna with single channel Agilent Array
AgiMicroRna
AgiMicroRna
12.8 years ago
John Lande
▴ 280
0
votes
3
replies
1.2k
views
AgiMicroRna problems
miRNA
Normalization
FeatureExtraction
PROcess
microRNA
AgiMicroRna
miRNA
Normalization
updated 13.6 years ago by
Mike Walter
▴ 230 • written 13.6 years ago by
Mark Cowley
▴ 910
1
vote
2
replies
1.0k
views
covert from RGList to uRNAList
agilent
agimicrorna
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
ahadli.farid
▴ 30
0
votes
2
replies
1.4k
views
AgiMicroRna package is not available at bioconductor or not in active form???
Microarray
Network
microRNA
AgiMicroRna
Microarray
Network
microRNA
AgiMicroRna
updated 14.1 years ago by
Alberto Goldoni
▴ 60 • written 14.1 years ago by
Sean Davis
21k
1
vote
2
replies
1.1k
views
Package: AgiMicroRna; Error in Loading the file
AgiMicroRna
6.6 years ago
neelakandanbt
• 0
0
votes
2
replies
1.3k
views
problems in reading a file in AgiMicroRna package
agimicrorna
read.agimicrorna
agilent microarrays
updated 6.6 years ago by
Axel Klenk
★ 1.0k • written 6.6 years ago by
neelakandanbt
• 0
0
votes
1
reply
1.2k
views
AgiMicroRna problem
Annotation
microRNA
AgiMicroRna
Annotation
microRNA
AgiMicroRna
updated 13.3 years ago by
Paulo Nuin
▴ 200 • written 13.3 years ago by
Pedro Lopez-Romero
▴ 120
0
votes
1
reply
1.3k
views
AgiMicroRna and readMicroRnaFE
miRNA
AgiMicroRna
miRNA
AgiMicroRna
updated 13.7 years ago by
Richard Friedman
★ 2.0k • written 13.7 years ago by
Paulo Nuin
▴ 200
0
votes
1
reply
1.7k
views
AgiMicroRna for new Agilent Chip format - columns gTotalGeneSignal and gTotalProbeSignal missing
GO
AgiMicroRna
GO
AgiMicroRna
updated 11.2 years ago by
Axel Klenk
★ 1.0k • written 11.2 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
segfault with rmaMicroRna in AgiMicroRna package
PROcess
AgiMicroRna
PROcess
AgiMicroRna
updated 14.0 years ago by
Seth Falcon
★ 7.4k • written 14.0 years ago by
heyi xiao
▴ 360
0
votes
1
reply
1.0k
views
Error message with rmaMicroRna on mouse data in AgiMicroRNA
Cancer
probe
AgiMicroRna
Cancer
probe
AgiMicroRna
updated 13.9 years ago by
Pedro López Romero
▴ 360 • written 13.9 years ago by
Richard Friedman
★ 2.0k
0
votes
1
reply
567
views
Unable to use the function named read.agiMicroRna()
AgiMicroRna
updated 4.4 years ago by
James W. MacDonald
65k • written 4.4 years ago by
topijush
▴ 10
0
votes
1
reply
796
views
Installing AgiMicroRna Package
AgiMicroRna
AgiMicroRna
updated 12.3 years ago by
Martin Morgan
25k • written 12.3 years ago by
Karthik K N
▴ 200
0
votes
1
reply
855
views
AgiMicroRna package error message
Normalization
microRNA
AgiMicroRna
Normalization
microRNA
AgiMicroRna
13.9 years ago
Wang, Yonghong NIH/NCI
▴ 60
0
votes
0
replies
983
views
Limma - batch issues
miRNA
Microarray
limma
PROcess
AgiMicroRna
miRNA
Microarray
limma
PROcess
AgiMicroRna
12.8 years ago
Segal, Corrinne
▴ 40
0
votes
0
replies
1.4k
views
AgiMicroRna - FilterMicroRna and SignificantMicroRna function
miRNA
zebrafish
probe
AgiMicroRna
miRNA
zebrafish
probe
AgiMicroRna
14.0 years ago
Neel Aluru
▴ 460
0
votes
0
replies
695
views
mvaPlots of RMA normalized data in AgiMicroRNA
Cancer
AgiMicroRna
Cancer
AgiMicroRna
13.9 years ago
Richard Friedman
★ 2.0k
0
votes
0
replies
728
views
AgiMicroRna and ComBat
miRNA
probe
AgiMicroRna
miRNA
probe
AgiMicroRna
13.9 years ago
Segal, Corrinne
▴ 40
0
votes
0
replies
773
views
ProbeNames are not matching miR names in RMA-normalized data with AgiMicroRna
miRNA
Microarray
Normalization
AgiMicroRna
miRNA
Microarray
Normalization
AgiMicroRna
13.2 years ago
Paola Ostano
▴ 10
0
votes
0
replies
1.1k
views
Agi4x44PreProcess
GUI
zebrafish
probe
AgiMicroRna
GUI
zebrafish
probe
AgiMicroRna
13.6 years ago
Neel Aluru
▴ 460
0
votes
0
replies
817
views
filterMicroRna function of AgiMicroRna for filtering by sample replicates
probe
microRNA
AgiMicroRna
probe
microRNA
AgiMicroRna
12.8 years ago
Viki S
▴ 20
0
votes
0
replies
1.1k
views
Issues with AgiMicroRna filtering step (Error in is(ddNORM, "uRNAList") : object 'ddNORM' not found)
probe
AgiMicroRna
probe
AgiMicroRna
12.3 years ago
Karthik K N
▴ 200
0
votes
0
replies
1.2k
views
segmentation fault in rma.background.correct()
GO
Preprocessing
AgiMicroRna
GO
Preprocessing
AgiMicroRna
11.7 years ago
Axel Klenk
★ 1.0k
0
votes
0
replies
1.2k
views
Agilent Chip G4858A-039494: columns gTotalGeneSignal, gTotalProbeSignal missing for AgiMicroRna
GO
AgiMicroRna
GO
AgiMicroRna
11.3 years ago
Guest User
★ 13k
0
votes
0
replies
1.7k
views
AgiMicroRna for new Agilent Chip format
Microarray
GO
limma
PROcess
microRNA
AgiMicroRna
Microarray
GO
limma
PROcess
microRNA
11.2 years ago
Gordon Smyth
50k
0
votes
0
replies
1.1k
views
Inappropriate Statistical Models for Agilent microRNA Microarray Data
agimicrorna
linear model
8.1 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.0k
views
AgiMicroRna_Error in xy.coords(x, y) : 'x' and 'y' lengths differ(tgsNormalization)
AgimicroRNA
7.6 years ago
cpsingh9
• 0
36 results • Page
1 of 1
Recent ...
Replies
Comment: Couldn't connect to server while using "pathways"
by
ATpoint
★ 4.1k
Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…
Answer: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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ATpoint
★ 4.1k
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Ben
▴ 50
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Sam
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Gordon Smyth
50k
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Zainab
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