Bioconductor AnnotationHub

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 26 days ago by Shiva • 0 • written 5.4 years ago by Guido Hooiveld ★ 3.9k

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4.4k

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AnnotationHub AnnotationForge Pseudomonas_aeruginosa

updated 5 months ago by James W. MacDonald 65k • written 17 months ago by Manmohit ▴ 10

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4.8k

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BiocFileCache AnnotationHub ExperimentHub

6 months ago • updated 8 days ago shepherl 3.8k

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4.9k

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clusterProfiler AnnotationHub GO uniprot

updated 12 weeks ago by Guido Hooiveld ★ 3.9k • written 3.2 years ago by Alberto • 0

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5.8k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 7 weeks ago by shepherl 3.8k • written 2.3 years ago by jon.klonowski ▴ 40

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319

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 19 days ago by Tim Peters ▴ 170 • written 28 days ago by s.malik • 0

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1.2k

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clusterProfiler Annotationhub

updated 6 months ago by Guido Hooiveld ★ 3.9k • written 6 months ago by BS • 0

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563

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tximeta AnnotationHub AnnotationHubData

6 months ago Thon • 0

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327

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 8 weeks ago by Michael Love 41k • written 8 weeks ago by Filipe • 0

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159

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annotatr AnnotationHub

3 months ago hayleyw • 0

10 results • Page 1 of 1

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Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0

Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks

Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k

The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …

Comment: Help with error using camera() in limma by James W. MacDonald 65k

Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …

Votes

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

Comment: Help with error using camera() in limma

Answer: Help with error using camera() in limma

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