Bioconductor GeneOntology

Showing : GeneOntology • reset

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318

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 7 weeks ago by Michael Love 41k • written 7 weeks ago by Filipe • 0

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1.6k

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rnaseq rnaseqGene geneontology

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by acram • 0

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792

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microRNA gene RNASeqRData edgeR geneontology

18 months ago faiza • 0

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513

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GO GeneOntology LocusIDtogeneIDconversion

18 months ago BioinFo.X • 0

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1.6k

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Annotation GeneOntology topGO GO

updated 22 months ago by James W. MacDonald 65k • written 22 months ago by Raito92 ▴ 60

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892

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GOstats Go.db GeneOntology

3.1 years ago MOHAMMAD • 0

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913

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GO.db Annotation Clusterprofile GeneOntology

updated 3.1 years ago by Basti ▴ 780 • written 3.1 years ago by MOHAMMAD • 0

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1.3k

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topGO enrichmentanalysis geneontology

updated 3.2 years ago by Lluís Revilla Sancho ▴ 730 • written 3.2 years ago by Aini • 0

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7.0k

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clusterprofiler geneontology

updated 6.5 years ago by thokall ▴ 160 • written 6.5 years ago by giuseppe0525 • 0

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974

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geneontology R go semantic similarity

updated 7.3 years ago by Valerie Obenchain ★ 6.8k • written 7.3 years ago by manasa22.reddy • 0

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Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Votes

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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