Bioconductor AnnotationHub

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 6 weeks ago by shepherl 3.8k • written 2.3 years ago by jon.klonowski ▴ 40

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5.5k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 23 days ago by Shiva • 0 • written 5.4 years ago by Guido Hooiveld ★ 3.9k

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4.9k

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clusterProfiler AnnotationHub GO uniprot

updated 11 weeks ago by Guido Hooiveld ★ 3.9k • written 3.2 years ago by Alberto • 0

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4.7k

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BiocFileCache AnnotationHub ExperimentHub

6 months ago • updated 5 days ago shepherl 3.8k

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4.4k

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AnnotationHub AnnotationForge Pseudomonas_aeruginosa

updated 5 months ago by James W. MacDonald 65k • written 16 months ago by Manmohit ▴ 10

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1.2k

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clusterProfiler Annotationhub

updated 6 months ago by Guido Hooiveld ★ 3.9k • written 6 months ago by BS • 0

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552

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tximeta AnnotationHub AnnotationHubData

6 months ago Thon • 0

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324

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 8 weeks ago by Michael Love 41k • written 8 weeks ago by Filipe • 0

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315

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 16 days ago by Tim Peters ▴ 170 • written 25 days ago by s.malik • 0

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157

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annotatr AnnotationHub

3 months ago hayleyw • 0

10 results • Page 1 of 1

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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