Showing : Annotationhub • reset
0
votes
1
reply
248
views
multiGSEA package in R not appropriately assigning metabolites to pathways?
metaboliteIDmapping AnnotationHub multiGSEA
4 months ago Thomas • 0
0
votes
11
replies
712
views
Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and annotation forge
AnnotationHub AnnotationForge Pseudomonas_aeruginosa
updated 5 months ago by 63k • written 5 months ago by • 0
2
votes
2
replies
359
views
[BigWigFile] import as RLE vs default and length comparaison
BSgenome.Hsapiens.UCSC.hg19 rtracklayer AnnotationHub
9 months ago Lenny186 • 0
0
votes
3
replies
503
views
Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
AnnotationHub org.Hs.eg.db ensembldb
10 months ago • updated 9 months ago sandmann.t ▴ 70
9
votes
21
replies
13k
views
ah <- AnnotationHub() Error in UseMethod("filter_"): no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tb…
AnnotationHub dplyr
updated 10 months ago by ▴ 10 • written 2.6 years ago by ▴ 40
0
votes
3
replies
2.8k
views
Convert Agilent Probe ID to gene IDs/Symbols
AnnotationHub biomaRt
updated 9 months ago by • 0 • written 2.2 years ago by ▴ 20
3
votes
6
replies
1.3k
views
How to manage AnnotationHub snapshots / most OrgDB are missing?
AnnotationHub OrgDb snapshotDate
updated 10 months ago by 3.5k • written 3.0 years ago by ★ 2.0k
5
votes
19
replies
2.7k
views
Ensembl plants at annotationHub?
ensembl ensembldb plant arabidopsis thaliana annotationhub
updated 7 months ago by ★ 2.0k • written 4.5 years ago by ★ 3.6k
0
votes
14
replies
3.7k
views
Easy way to turn OrgDb object from AnnotationHub into package?
AnnotationHub AnnotationDbi AnnotationForge pathview
6.3 years ago • updated 9 months ago Jenny Drnevich ★ 2.0k
9 results • Page 1 of 1
Recent ...
Replies
Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Anna ▴ 20
Thanks Gordon Actually, I am working in the clinical statistics department for the last 5 years, even though a bioinformatician, and the "…
Answer: DESeq2 + analysis question for design with uneven time point design by Michael Love 40k
I'd recommend reaching out to a local statistician or someone familiar with linear models in R. Unfortunately, I have to reserve my time on…
Answer: Genes with highest differential expression have very low read counts for most ge by Michael Love 40k
Have you use `lfcShrink`? Or `results` with `lfcThreshold`? Either of these are recommended for prioritizing DE genes.
Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k
> equivqalent in limma would be like a gene by gene specificic design matrix where no BL time point would exist but a continuous variable t…
Comment: Extract Limma Adjusted Values for Plotting by ATpoint ★ 2.9k
Yes, with normalized counts on log2 scale.
Votes
A: Ranges from a fasta file
Answer: NA transcript values in my Txdb
Comment: Interpret plot from DiffBind
Answer: Use with_go along with other filters in getBM function
Answer: Use with_go along with other filters in getBM function
Awards • All
Scholar to Mike Smith ★ 6.0k
Popular Question to Martin Morgan 25k
Teacher to deeenes ▴ 30
Popular Question to Hervé Pagès 16k
Popular Question to Gordon Smyth 47k
Locations • All
WEHI, Melbourne, Australia, 1 minute ago
Switzerland, 25 minutes ago
Germany, 1 hour ago
Russia, 2 hours ago
San Diego, 4 hours ago
Traffic: 218 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6