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Annotationhub
•
reset
0
votes
0
replies
122
views
Help using reduceSimMatrix with a custom annotation
AnnotationHub
GOSemSim
rrvgo
5 weeks ago
daccar98
• 0
5
votes
13
replies
1.6k
views
Installing annotation package in locally
AnnotationDbi
AnnotationHub
Annotation
AnnotationForge
7 weeks ago • updated 6 weeks ago
KABILAN
• 0
0
votes
3
replies
667
views
makeOrgPackageFromGAF() error with gene ID "GID"
AnnotationHub
AnnotationDbi
AnnotationForge
4 months ago
Anna
• 0
1
vote
5
replies
875
views
EnsDb: bad_weak_ptr
AnnotationHub
BiocFileCache
5 months ago
Lluís Revilla Sancho
▴ 760
0
votes
5
replies
1.1k
views
Cannot connect to annotationhub server
AnnotationHub
ExperimentHub
updated 5 months ago by
shepherl
4.1k • written 5 months ago by
Mishaal Irfan
• 0
0
votes
0
replies
284
views
News:
AnnotationHub and ExperimentHub Access Downtime
AnnotationHub
ExperimentHub
5 months ago
shepherl
4.1k
1
vote
1
reply
372
views
Documenting resources in an `ExperimentHub` package?
AnnotationHub
ExperimentHub
updated 6 months ago by
James W. MacDonald
67k • written 6 months ago by
Tim Barry
• 0
6
votes
12
replies
7.0k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
13 months ago • updated 7 months ago
shepherl
4.1k
10
votes
41
replies
7.3k
views
Ensembl plants at annotationHub?
ensembl
ensembldb
plant
arabidopsis thaliana
annotationhub
updated 6 months ago by
Daniele
• 0 • written 6.1 years ago by
Guido Hooiveld
★ 4.1k
1
vote
6
replies
951
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 8 months ago by
Tim Peters
▴ 200 • written 8 months ago by
s.malik
• 0
2
votes
1
reply
712
views
clusterProfiler, AnnotationHub, and discrepancies in GO Terms
Atlanticsalmon
clusterPro
Salmosalar
AnnotationHub
GeneOntology
updated 9 months ago by
Michael Love
43k • written 9 months ago by
Filipe
• 0
0
votes
0
replies
423
views
Annotatr Duplicate Entries
annotatr
AnnotationHub
10 months ago
hayleyw
• 0
9
votes
14
replies
7.7k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 4 months ago by
shepherl
4.1k • written 2.9 years ago by
jon.klonowski
▴ 40
3
votes
11
replies
6.1k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler
AnnotationHub
GO
uniprot
updated 10 months ago by
Guido Hooiveld
★ 4.1k • written 3.9 years ago by
Alberto
• 0
0
votes
2
replies
1.2k
views
AnnotationHub not working
annotation
AnnotationHub
written 7.4 years ago by
genprabir106
• 0
15 results • Page
1 of 1
Recent ...
Replies
Comment: Advice needed: Using limma for differential pathway analysis with continuous dis
by
Tadeoye
▴ 20
Thank you so much for the clarification!
Comment: Rsubread - Error on buildindex - big ref sequence
by
bryan.penning
• 0
That is most unfortunate. I truly believe subread would be a superior aligner for complex plant genomes, especially in terms of accuracy. T…
Answer: Matching patterns in an AAStringset
by
Aidan
▴ 60
This question is tagged `Biostrings`, but `str_detect` isn't part of the `Biostrings` package. If you're trying to use the tidyverse `str_d…
Comment: Can we get beta values with DMRcate package
by
James W. MacDonald
67k
If `getCollapsedBetas` isn't exported, you need to update. It's been exported since DMRcate_3.1.9 and the release version is 3.2.0 You sai…
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
ATpoint
★ 4.6k
Unknown reason means that from the results you show one cannot easily infer why exactly the IF removed this gene in one but not in the othe…
Votes
Comment: What type of counts data to import for performing Isoform analysis in edgeR
A: Relations used in GO.db GOBPANCESTOR
Relations used in GO.db GOBPANCESTOR
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
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Pedro Baldoni
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Wei Shi
★ 3.6k
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Guillaume Tiberi
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bryan.penning
• 0
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shepherl
4.1k
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