Bioconductor Annotationhub

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627

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clusterProfiler Annotationhub

updated 5 weeks ago by Guido Hooiveld ★ 3.8k • written 5 weeks ago by BS • 0

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1.9k

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BiocFileCache AnnotationHub ExperimentHub

updated 16 days ago by khaserdene99 • 0 • written 5 weeks ago by shepherl 3.6k

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326

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tximeta AnnotationHub AnnotationHubData

6 weeks ago Thon • 0

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552

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metaboliteIDmapping AnnotationHub multiGSEA

10 months ago Thomas • 0

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3.1k

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AnnotationHub AnnotationForge Pseudomonas_aeruginosa

updated 5 days ago by James W. MacDonald 64k • written 12 months ago by Manmohit ▴ 10

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clusterProfiler AnnotationHub GO uniprot

updated 3 months ago by Jerina ▴ 10 • written 2.8 years ago by Alberto • 0

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4.1k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 6 weeks ago by karenserrano • 0 • written 5.0 years ago by Guido Hooiveld ★ 3.8k

7 results • Page 1 of 1

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Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Thanks James for your helpful response. This particular experimental set up is very common in iPSC studies, where multiple differentiations…

Comment: DESeq2 test for synergistic vs additive effects by Jay • 0

Why is TrtAB - TrtA - TrtB + Control "not really a thing"? i came to this forum answer when attempting to use EdgeR to answer a similar que…

Comment: NCBI protein conversion to CDNA and NCBI gene (in R) by Gordon Smyth 48k

Continuation of https://support.bioconductor.org/p/9155428/

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Tim Peters ▴ 150

Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…

Comment: NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R by R_Page • 0

Thank you, this works well. As for CDNA, I figured out what I need to find, and have made a new post regarding it.

Votes

Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

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