Bioconductor Annotationhub

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7.3k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 6 months ago by Daniele • 0 • written 6.1 years ago by Guido Hooiveld ★ 4.1k

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7.7k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 4 months ago by shepherl 4.1k • written 2.9 years ago by jon.klonowski ▴ 40

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BiocFileCache AnnotationHub ExperimentHub

13 months ago • updated 7 months ago shepherl 4.1k

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1.6k

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AnnotationDbi AnnotationHub Annotation AnnotationForge

7 weeks ago KABILAN • 0

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6.1k

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clusterProfiler AnnotationHub GO uniprot

updated 10 months ago by Guido Hooiveld ★ 4.1k • written 3.9 years ago by Alberto • 0

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715

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 9 months ago by Michael Love 43k • written 9 months ago by Filipe • 0

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373

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AnnotationHub ExperimentHub

updated 6 months ago by James W. MacDonald 67k • written 6 months ago by Tim Barry • 0

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888

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AnnotationHub BiocFileCache

5 months ago Lluís Revilla Sancho ▴ 760

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958

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 8 months ago by Tim Peters ▴ 200 • written 8 months ago by s.malik • 0

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122

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AnnotationHub GOSemSim rrvgo

5 weeks ago daccar98 • 0

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288

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AnnotationHub ExperimentHub

5 months ago shepherl 4.1k

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671

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AnnotationHub AnnotationDbi AnnotationForge

4 months ago Anna • 0

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1.1k

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AnnotationHub ExperimentHub

updated 5 months ago by shepherl 4.1k • written 5 months ago by Mishaal Irfan • 0

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424

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annotatr AnnotationHub

10 months ago hayleyw • 0

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1.2k

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annotation AnnotationHub

written 7.4 years ago by genprabir106 • 0

15 results • Page 1 of 1

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Comment: p value is 0, padj is 0 by Michael Love 43k

``` > set.seed(1); t.test(rnorm(200,rep(c(0,80),each=100)) ~ rep(0:1,each=100))$p.value [1] 0 ```

Answer: Cannot install GO.db and org.Hs.eg.db by James W. MacDonald 67k

You might try tracing the namespace loading. ``` Sys.setenv("_R_TRACE_LOADNAMESPACE_"="2") install("org.Hs.eg.db") ``` And see if th…

Answer: p value is 0, padj is 0 by James W. MacDonald 67k

It is quite possible for a very small p-value to remain very small after multiplicity adjustment. I don't know the cutoff for `DESeq2` to r…

Answer: Help using rtracklayer for gene ID extraction by James W. MacDonald 67k

You don't need `rtracklayer` for this (not directly anyway), but instead you need `txdbmaker` which you can use to make a `TxDb` object tha…

Answer: Feature Counts - potential bug with outfile.jcounts by Wei Shi ★ 3.6k

We will further develop the junction quantification module to support the use of user-provided annotation data for annotating detected junc…

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Answer: Feature Counts - potential bug with outfile.jcounts

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2

Answer: Mapping Between GenBank ID's and Uniprot

Comment: What type of counts data to import for performing Isoform analysis in edgeR

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Popular Question to giulia.gentile ▴ 10