Bioconductor BiocVersion

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BiocVersion

updated 12 months ago by ATpoint ★ 4.6k • written 12 months ago by paul.lempka02 • 0

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BiocVersion phangorn ShinyApps

updated 14 months ago by James W. MacDonald 67k • written 14 months ago by susan • 0

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BioCor bioc BiocVersion

14 months ago feifan • 0

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BiocVersion OrgDb clusterProfiler

2.2 years ago MK • 0

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BiocVersion

updated 3.4 years ago by shepherl 4.1k • written 3.4 years ago by J • 0

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destiny BiocVersion

updated 3.5 years ago by shepherl 4.1k • written 3.5 years ago by Yiming ▴ 10

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DESeq2 BiocVersion

updated 3.5 years ago by glennmaxwell229 • 0 • written 3.5 years ago by Daisy • 0

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bioconductoroversight news community BiocVersion

3.8 years ago Matthew Ritchie ▴ 1000

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versions BiocVersion dependencies

updated 3.8 years ago by shepherl 4.1k • written 3.8 years ago by sohitmiglani • 0

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bioconductoroversight community BiocVersion news

updated 3.8 years ago by aedin • 0 • written 3.9 years ago by Matthew Ritchie ▴ 1000

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massgeek Reactome Proteomics STRINGdb

4.1 years ago paula • 0

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docker BiocManager BiocVersion

updated 5.7 years ago by Martin Morgan 25k • written 5.7 years ago by Michael Steinbaugh ▴ 90

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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

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A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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