Bioconductor Bugs

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2.3k

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bugs limma

3.2 years ago Zhenyu • 0

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2.1k

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arrayexpress affy bugs

updated 7.7 years ago by James W. MacDonald 68k • written 7.7 years ago by Ed Siefker ▴ 230

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3.4k

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GSVA bug gsva bugs

updated 8.1 years ago by Robert Castelo ★ 3.4k • written 8.1 years ago by JasonL_Weirather ▴ 10

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1.4k

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DiffBind bugs

updated 8.5 years ago by Rory Stark ★ 5.2k • written 8.5 years ago by jeremydt • 0

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2.1k

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txdb.hsapiens.ucsc.hg19.knowngene seqlevels bugs

updated 8.9 years ago by Hervé Pagès 16k • written 8.9 years ago by wcstcyx ▴ 30

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1.8k

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annotationhub bugs encode bed

9.0 years ago • updated 8.9 years ago wcstcyx ▴ 30

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1.4k

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bugs impute

9.2 years ago Shicheng Guo • 0

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2.1k

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software error bugs deseq2

updated 9.8 years ago by Michael Love 43k • written 9.8 years ago by john.hu • 0

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1.8k

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monocle bugs

10.0 years ago wanghao1993333 • 0

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2.1k

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ggbio bugs tracks autoplot

10.8 years ago cooketho • 0

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1.9k

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arrayqualitymetrics bugs error

updated 11.0 years ago by James W. MacDonald 68k • written 11.0 years ago by daugherty_a • 0

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2.4k

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Bugs deseq2

updated 11.2 years ago by Michael Love 43k • written 11.2 years ago by lmf.bill@gmail.com ▴ 10

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1.7k

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Bugs ggbio

11.2 years ago Anne Deslattes Mays ▴ 30

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Comment: Getting a large intercept with DESeq2 by Denise • 0

Hi, Thank you very much, James and Michael, for getting back to me! I noticed the large intercept when plotting the coefficients returned …

Comment: Error installing Seqinfo by shepherl 4.2k

Yes and we are working on getting the updated windows binaries distributed asap! We are hopeful by the end of this week

Comment: APAlyzer by shepherl 4.2k

We apologize for their unresponsiveness; you could try posting your question here to see if anyone in the community could assist in the me…

Answer: Error installing Seqinfo by fabio.marroni • 0

I am answering my own question. I found the solution thanks to [this post][1], and I am writing here the very simple procedure: 1) Instal…

Comment: Getting a large intercept with DESeq2 by Michael Love 43k

Thanks James -- Denise you can check the "note on factor levels" in the vignette. And I'd recommend `plotCounts()` for looking at individu…

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Answer: replace cat with message in glmTreat when lfc = 0

Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors

Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors

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