Bioconductor Bugs

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2.4k

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bugs limma

3.4 years ago Zhenyu • 0

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2.2k

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arrayexpress affy bugs

updated 7.9 years ago by James W. MacDonald 68k • written 7.9 years ago by Ed Siefker ▴ 230

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3.6k

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GSVA bug gsva bugs

updated 8.3 years ago by Robert Castelo ★ 3.4k • written 8.3 years ago by JasonL_Weirather ▴ 10

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1.5k

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DiffBind bugs

updated 8.6 years ago by Rory Stark ★ 5.2k • written 8.7 years ago by jeremydt • 0

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2.1k

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txdb.hsapiens.ucsc.hg19.knowngene seqlevels bugs

updated 9.1 years ago by Hervé Pagès 16k • written 9.1 years ago by wcstcyx ▴ 30

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1.8k

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annotationhub bugs encode bed

9.1 years ago wcstcyx ▴ 30

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1.4k

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bugs impute

9.4 years ago Shicheng Guo • 0

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2.2k

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software error bugs deseq2

updated 10.0 years ago by Michael Love 43k • written 10.0 years ago by john.hu • 0

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1.9k

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monocle bugs

10.2 years ago wanghao1993333 • 0

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2.1k

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ggbio bugs tracks autoplot

11.0 years ago cooketho • 0

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1.9k

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arrayqualitymetrics bugs error

updated 11.2 years ago by James W. MacDonald 68k • written 11.2 years ago by daugherty_a • 0

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2.4k

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Bugs deseq2

updated 11.3 years ago by Michael Love 43k • written 11.3 years ago by lmf.bill@gmail.com ▴ 10

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1.8k

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Bugs ggbio

11.4 years ago Anne Deslattes Mays ▴ 30

13 results • Page 1 of 1

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Comment: Are individual-mouse-based statistics possible in CellChat? by LillianaVolkman99 • 0

thank you very much. https://www.biostars.org/p/9617271/

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

My apologies, I forgot that `design.group` is not included in the final matrix, because the baseline group effects are already captured by …

Answer: Bile acid analysis with limpa by Gordon Smyth 53k

I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard format mass spec data from …

Comment: How to convert .raw data for use in xcms by TikTsossa33ssalpc • 0

It sounds like your mzML conversion has a CV term that XCMS doesn t recognize, which often happens with newer vendor formats or outdated ms…

Comment: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace by TikTsossa33ssalpc • 0

To calculate event numbers for boolean combinations in flow cytometry, you should use a logic gating tool or a script that processes popula…

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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