Bioconductor Bugs

Showing : Bugs • reset

votes

replies

1.8k

views

bugs limma

2.2 years ago Zhenyu • 0

votes

replies

1.8k

views

arrayexpress affy bugs

updated 6.7 years ago by James W. MacDonald 67k • written 6.7 years ago by Ed Siefker ▴ 230

votes

replies

2.7k

views

GSVA bug gsva bugs

updated 7.1 years ago by Robert Castelo ★ 3.4k • written 7.1 years ago by JasonL_Weirather ▴ 10

votes

1.2k

views

DiffBind bugs

updated 7.5 years ago by Rory Stark ★ 5.2k • written 7.5 years ago by jeremydt • 0

votes

replies

1.7k

views

txdb.hsapiens.ucsc.hg19.knowngene seqlevels bugs

updated 7.9 years ago by Hervé Pagès 16k • written 8.0 years ago by wcstcyx ▴ 30

votes

replies

1.4k

views

annotationhub bugs encode bed

8.0 years ago wcstcyx ▴ 30

votes

replies

1.2k

views

bugs impute

8.2 years ago Shicheng Guo • 0

votes

replies

1.8k

views

software error bugs deseq2

updated 8.8 years ago by Michael Love 42k • written 8.8 years ago by john.hu • 0

votes

replies

1.6k

views

monocle bugs

9.0 years ago wanghao1993333 • 0

votes

replies

1.8k

views

ggbio bugs tracks autoplot

9.8 years ago cooketho • 0

votes

replies

1.6k

views

arrayqualitymetrics bugs error

updated 10.0 years ago by James W. MacDonald 67k • written 10.0 years ago by daugherty_a • 0

votes

replies

2.2k

views

Bugs deseq2

updated 10.2 years ago by Michael Love 42k • written 10.2 years ago by lmf.bill@gmail.com ▴ 10

votes

replies

1.5k

views

Bugs ggbio

10.2 years ago Anne Deslattes Mays ▴ 30

13 results • Page 1 of 1

Recent ...

Replies

Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0

Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thanks a lot for the help. You saved my day

Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k

The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…

Votes

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Answer: Differene between the Wald and LRT test for time-series gene expression data

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

Awards • All