Showing : Cancer • reset
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Job openings: Staff Scientist - Computational Biology and Bioinformatics - Massachusetts General Hospital
Sequencing Cancer Sequencing Cancer
13.6 years ago Wittner, Ben ▴ 290
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Deferential gene expression databases
Microarray Genetics Annotation Normalization Pathways GO Cancer BSgenome probe annotate
13.7 years ago saikouy bah ▴ 30
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Compensating using spillover function of flowCore
Cancer flowCore Cancer flowCore
13.7 years ago Greg Finak ▴ 240
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gplots Heatmap
SNP Transcription Sequencing RNASeq miRNA Microarray Annotation Normalization GO Cancer
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 10
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DeSeq vs current version of Cuffdiff
Sequencing Bayesian Cancer DESeq Sequencing Bayesian Cancer DESeq
updated 13.7 years ago by ▴ 290 • written 13.7 years ago by ★ 2.0k
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Open Position :: Postdoc in systems genetics in Cambridge
Transcription Genetics Visualization Network Cancer Breast Lung Transcription Genetics
13.7 years ago Florian Markowetz ▴ 20
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GenomicFeatures::makeTranscriptDbFromGTF?
Cancer GenomicFeatures Cancer GenomicFeatures
updated 13.7 years ago by ★ 11k • written 13.7 years ago by ★ 13k
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RE : maping SNPs
SNP Annotation Cancer SNPlocs TranscriptDb GenomicFeatures GenomicRanges SNP Annotation
updated 13.7 years ago by 16k • written 13.7 years ago by ▴ 450
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[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt GenomicFeatures Cancer Organism biomaRt GenomicFeatures
updated 13.7 years ago by ▴ 660 • written 13.7 years ago by ★ 1.6k
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Genomicfeatures chromosome names matching
Cancer TranscriptDb convert Cancer TranscriptDb convert
13.7 years ago Hervé Pagès 16k
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822
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narrow on GappedAlignments fails with error
Cancer GenomicRanges Cancer GenomicRanges
13.7 years ago Hervé Pagès 16k
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[course] CSAMA 2012: Computational Statistics for Genome Biology (Tenth Edition)
Microarray Annotation Cancer Microarray Annotation Cancer
13.7 years ago stefano iacus ▴ 430
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Error with GAGE
Cancer Cancer
updated 13.7 years ago by ★ 1.6k • written 13.7 years ago by 25k
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FW: URGENT Help required: Getting this error with GAGE analysis, input files attached
Microarray Annotation Pathways GO Cancer Breast cycle gage Microarray Annotation GO
updated 13.7 years ago by ▴ 200 • written 13.7 years ago by 25k
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2 color microarray and decidetests output
Cancer limma Cancer limma
13.7 years ago Srikanth Manda Srinivas ▴ 200
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1.1k
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2 color microarray decidetests Output
Cancer limma Cancer limma
13.7 years ago Srinivas Srikanth ▴ 70
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1.9k
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shift function (GenomicRanges, IRanges), issue with negative start values and circular DNA
Cancer Cancer
updated 13.7 years ago by ▴ 100 • written 13.7 years ago by 16k
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Workshop, Feb 27/28: Advanced R / Bioconductor Workshop on High-Throughput Genetic Analysis
Cancer Cancer
13.7 years ago Martin Morgan 25k
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How to prepare Custom INPUT(DATA) files for GAGE Analysis and DO a BASIC GAGE analysis using those files
Microarray GO Cancer Breast gage Microarray GO Cancer Breast gage
updated 13.7 years ago by ▴ 200 • written 13.7 years ago by ★ 6.8k
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[R-sig-hpc] About Multicore: mclapply
GO Cancer GO Cancer
13.7 years ago Martin Morgan 25k
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RMA normalisation of test microarray data to training data
Microarray GO Cancer affy Microarray GO Cancer affy
updated 13.8 years ago by 68k • written 13.8 years ago by ★ 1.9k
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limma: adding weights to mroast
Cancer limma Cancer limma
13.8 years ago Gordon Smyth 53k
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installation of Rsamtools
GO Cancer Rsamtools GO Cancer Rsamtools
13.8 years ago Steve Lianoglou ★ 13k
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1.0k
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lumiHumanAll.db - wrong information in lumiHumanAllCHR for some probes?
Cancer probe Cancer probe
updated 13.8 years ago by 6.7k • written 13.8 years ago by ▴ 740
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Fwd: the diffrent alignment result between pairwiseAlignment() in Biostrings package and EBI-webserver
Alignment Cancer Biostrings Alignment Cancer Biostrings
updated 13.8 years ago by ★ 6.8k • written 13.8 years ago by ▴ 50
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limma: adding weights to mroast
Cancer limma Cancer limma
13.8 years ago Anthoula Gaigneaux ▴ 20
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Announcement: NCI Second Symposium on Translational Genomics
Sequencing Cancer Sequencing Cancer
13.8 years ago Sean Davis 21k
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Minimal region of overlap between two GRanges objects
Cancer Cancer
updated 13.8 years ago by 25k • written 13.8 years ago by ★ 1.9k
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Background correction with neqc
Normalization Cancer Normalization Cancer
updated 23 months ago by 53k • written 13.9 years ago by ★ 13k
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intragenic sequence extraction
Annotation Cancer Organism BSgenome BSgenome GenomicFeatures Annotation Cancer Organism
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 90
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1.3k
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arrayQualityMetrics: expression or probe-level data?
Cancer gcrma Cancer gcrma
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 20
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Bioconductor Employment: Statistical Research Associate
DNASeq Cancer DNASeq Cancer
13.9 years ago Martin Morgan 25k
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827
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GSVA error when trying to bootstrap
Cancer Cancer
13.9 years ago Justin Guinney ▴ 10
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1.7k
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RE : RE : rsamtools installation
Cancer Biostrings IRanges Rsamtools BiocInstaller Cancer Biostrings IRanges Rsamtools
updated 13.9 years ago by ▴ 140 • written 13.9 years ago by 25k
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PhD position available in Innsbruck, Austria
Transcription Microarray Cancer Leukemia Transcription Microarray Cancer Leukemia
13.9 years ago Johannes Rainer ▴ 80
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975
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Fwd: extract introns
Cancer Organism BSgenome BSgenome Cancer Organism BSgenome BSgenome
13.9 years ago Steve Lianoglou ★ 13k
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objective criterion for identification of outlying arrays by pca
Network Bayesian Cancer Network Bayesian Cancer
13.9 years ago shirley zhang ★ 1.0k
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1.7k
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Does liftOver work for SNPs mapping to different chr between different builds
SNP GO Cancer SNPlocs rtracklayer SNP GO Cancer SNPlocs rtracklayer
updated 13.9 years ago by ★ 11k • written 13.9 years ago by ★ 1.0k
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Bioinformatics/biostatistics position at the Institute of Cancer Research, UK
Sequencing Microarray Genetics Cancer Sequencing Microarray Genetics Cancer
13.9 years ago Daniel Brewer ★ 1.9k
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1.4k
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goSeq error
Cancer PROcess edgeR goseq ASSIGN Cancer PROcess edgeR goseq ASSIGN
13.9 years ago Matthew Young ▴ 50
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10
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2.4k
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objective criterion for identification of outlying arrays by pca
Bayesian Cancer Bayesian Cancer
updated 14.0 years ago by 6.7k • written 14.0 years ago by ★ 2.0k
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13k
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Customizing gplots heatmap.2 - color range for heatmap and legend for RowSideColors
Cancer convert Cancer convert
14.0 years ago Chao-Jen Wong ▴ 580
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3
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1.5k
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Practical utilization of SQN in ST1.0 Gene normalization.
Bayesian Cancer oligo Bayesian Cancer oligo
updated 14.0 years ago by ★ 4.2k • written 14.0 years ago by ★ 2.0k
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NUSE and RLE PLOTS for ST1.0 Gene chips with oligo w/o 1st quantile line
Bayesian Cancer oligo Bayesian Cancer oligo
14.0 years ago Richard Friedman ★ 2.0k
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Computational biologist positions at the PICR
Proteomics Cancer Proteomics Cancer
14.0 years ago Crispin Miller ★ 1.1k
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1.2k
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Computational Biologist position available in Screening Unit in Milan, Italy
Cancer Cancer
14.0 years ago mattia pelizzola ▴ 200
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898
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Statistical programmer position at FHCRC
Cancer Cancer
14.0 years ago Greg Finak ▴ 240
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0
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814
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BSgenome package for sacCer3
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
14.0 years ago Hervé Pagès 16k
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1.4k
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[Job] Functional genomic analysis of cancer/RNAi screening
Transcription Sequencing Genetics Pathways Cancer Prostate Transcription Sequencing Cancer
14.0 years ago Sean Davis 21k
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1.6k
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Bioinformatics course - October 2011 Registration is now open
Microarray Cancer biomaRt ArrayExpress genomes SANTA Microarray Cancer biomaRt genomes
14.0 years ago Claude Chelala ▴ 40
1,555 results • Page 10 of 32
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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