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Chromosome
•
reset
0
votes
2
replies
544
views
How to find the number of protein-coding genes in each chromosome arm in human?
gene
chromosome
proteincodinggene
12 months ago
Liliian
• 0
3
votes
5
replies
1.8k
views
Splitting a TxDB or GRanges by Chromosome
GenomicRanges
split
chromosome
TxDb
updated 2.4 years ago by
Hervé Pagès
16k • written 2.4 years ago by
jon.klonowski
▴ 40
5
votes
4
replies
9.7k
views
Getting rs ids using chr coordinates | Biomart
SNP
rs id
Biomart
Chromosome
coordinates
updated 9 months ago by
James W. MacDonald
65k • written 3.7 years ago by
Mahan
• 0
0
votes
4
replies
773
views
Genomic Annotation Package Ensembl
Chromosome
Annotation
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
Bine
▴ 40
0
votes
2
replies
775
views
Parsing error creating tx2gene object for tximport
tximport
GCF feature table
parsing error
chromosome
updated 4.0 years ago by
Michael Love
41k • written 4.0 years ago by
knholm
• 0
0
votes
0
replies
506
views
Conversion of RefSeq data to chromosomal position
RefSeq
Chromosome
Mutalyzer
4.1 years ago
heiko_kin
▴ 60
1
vote
1
reply
489
views
Differential Expression by Chromosome using edgeR
edgeR
chromosome
RNAseq
updated 4.1 years ago by
swbarnes2
★ 1.3k • written 4.1 years ago by
missmoparker
• 0
0
votes
1
reply
787
views
Understand the chromosome name in homo sapiens gene database
homo sapiens
chromosome
updated 5.9 years ago by
James W. MacDonald
65k • written 5.9 years ago by
xchen8
• 0
2
votes
3
replies
1.9k
views
What's the best way to retrieve the sizes (lengths) of chromosomes for a reference genome assembly?
bsgenome
chromosome
reference genome
updated 6.2 years ago by
Hervé Pagès
16k • written 6.2 years ago by
Nathan Sheffield
▴ 10
1
vote
5
replies
2.5k
views
how to plot human genome chromosome Ideogram with each length by Gviz
Gviz
chromosome
ideogram
updated 7.1 years ago by
bernatgel
▴ 150 • written 7.2 years ago by
dulunar
▴ 10
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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