Showing : Clustering • reset
0
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2.0k
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Re: [S] Error in clustering procedure
Clustering Clustering
updated 19.7 years ago by ★ 1.0k • written 19.7 years ago by ★ 3.9k
0
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6
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1.6k
views
clustering question
Clustering Clustering
updated 18.3 years ago by ★ 6.0k • written 18.3 years ago by ▴ 890
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5
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1.5k
views
Best options for cross validation machine learning
Microarray Clustering Cancer Microarray Clustering Cancer
updated 14.3 years ago by ▴ 450 • written 14.3 years ago by ★ 1.9k
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4
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1.1k
views
win 64bit and general BioC computing power?
GO Clustering affy limma gcrma PROcess GO Clustering affy limma gcrma PROcess
updated 19.9 years ago by ▴ 360 • written 19.9 years ago by ▴ 940
0
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8
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3.1k
views
hclust and (Eisen+ de Hoon) cluster3 program
Clustering Clustering
updated 19.5 years ago by ▴ 290 • written 19.5 years ago by ▴ 140
0
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4
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1.5k
views
Positive correlation between dye-swap technical replicates
Normalization Clustering probe limma GLAD Normalization Clustering probe limma GLAD
14.4 years ago • updated 14.3 years ago Michał Góralski ▴ 40
0
votes
6
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1.2k
views
where to start?
Classification Clustering Category Classification Clustering Category
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 40
0
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3
replies
899
views
heatmap.2 and makeContrasts
Clustering Clustering
updated 13.2 years ago by ★ 13k • written 13.2 years ago by ▴ 40
0
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3
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1.4k
views
cross validation / bootstrap after classification
Clustering Clustering
updated 18.6 years ago by ▴ 30 • written 18.6 years ago by ▴ 310
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3
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3.4k
views
phyloseq/DESeq gives negative transformed values
Microbiome Normalization Clustering DESeq DESeq2 Microbiome Normalization Clustering DESeq
updated 10.0 years ago by ▴ 130 • written 10.0 years ago by 42k
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3
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1.5k
views
tweaks for the heatmap ()?
Clustering marray Clustering marray
updated 16.5 years ago by ▴ 510 • written 16.5 years ago by ▴ 270
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3
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1.2k
views
contributing to Bioconductor
GO Clustering geneplotter GO Clustering geneplotter
21.2 years ago Wilkinson, Mark ▴ 60
1
vote
3
replies
2.2k
views
microarray analysis in R without replicates
Microarray Clustering Microarray Clustering
updated 14.7 years ago by ▴ 630 • written 14.7 years ago by ▴ 60
0
votes
5
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3.2k
views
DESeq2
Normalization Classification Clustering DESeq cqn DESeq2 Normalization Classification cqn
updated 11.2 years ago by 42k • written 11.2 years ago by ★ 13k
3
votes
4
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2.1k
views
Large differences in sample clustering using cummeRbund (csDendro) and rlog-distance (DESeq2)
deseq2 cummerbund rlog fpkm clustering
8.3 years ago Jon Bråte ▴ 250
0
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3
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2.6k
views
Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
18.3 years ago McGee, Monnie ▴ 300
0
votes
3
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1.2k
views
Problems with heatmap on genes...
Clustering Clustering
updated 19.5 years ago by ▴ 270 • written 19.5 years ago by ▴ 540
0
votes
3
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1.0k
views
hgu133_plus_2?
Clustering gcrma Clustering gcrma
updated 19.3 years ago by ▴ 150 • written 19.3 years ago by ▴ 10
0
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4
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1.3k
views
Gene clusters based on gene expression across samples
kmeans gene expression clustering
6.6 years ago • updated 6.5 years ago Jane Merlevede ▴ 90
0
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3
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1.8k
views
GO enrichment significance
GO Clustering Cancer Lung GO Clustering Cancer Lung
11.9 years ago Grimes Mark ▴ 40
0
votes
4
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1.1k
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Theoretical Question
Microarray GO Clustering Cancer limma Microarray GO Clustering Cancer limma
updated 20.0 years ago by ▴ 810 • written 20.0 years ago by 66k
0
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4
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1.4k
views
Clustering like Eisen
Clustering Clustering
updated 19.8 years ago by 21k • written 19.8 years ago by ▴ 70
0
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5
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2.5k
views
brief quesion on DESeq2
Clustering GenomicRanges DESeq2 Clustering GenomicRanges DESeq2
updated 11.1 years ago by ▴ 20 • written 11.1 years ago by 42k
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3
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2.2k
views
batch effects 450K
Clustering Cancer Breast minfi sva Clustering Cancer Breast minfi sva
updated 12.0 years ago by ▴ 110 • written 12.0 years ago by ★ 13k
0
votes
2
replies
1.0k
views
Illumina based one color microarray data analysis
Microarray Clustering Microarray Clustering
updated 10.7 years ago by ★ 3.6k • written 10.7 years ago by ★ 13k
0
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2
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1.1k
views
Batch effects and linear models
Clustering Clustering
updated 19.3 years ago by ▴ 810 • written 19.3 years ago by ▴ 100
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2
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1.4k
views
DESeq variance stabilisation and clustering
Genetics Clustering PROcess DESeq Genetics Clustering PROcess DESeq
updated 13.2 years ago by ▴ 30 • written 13.2 years ago by ▴ 20
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13
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2.2k
views
Bioconductor Digest, Vol 87, Issue 10
Clustering hopach Clustering hopach
updated 14.0 years ago by ▴ 160 • written 14.0 years ago by ▴ 130
14
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4
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29k
views
heatmap.2() get matrix after hierarchical clustering
Clustering Clustering
updated 11.6 years ago by ★ 1.7k • written 11.6 years ago by ★ 13k
0
votes
3
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1.1k
views
Reg: Different clustering methods available for affy data
Clustering Clustering
updated 14.1 years ago by 21k • written 14.1 years ago by ▴ 170
0
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6
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1.6k
views
Fwd: how to plot corr between two tissues/dendrograms
Microarray GO Clustering Microarray GO Clustering
updated 13.6 years ago by ★ 1.1k • written 13.6 years ago by 21k
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votes
2
replies
1000
views
Retrieving a subset from normalized microarray data for differential test in R package, Limma
Clustering limma Clustering limma
updated 13.1 years ago by ▴ 80 • written 13.1 years ago by ▴ 10
0
votes
7
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2.5k
views
scholarly reference for "don't draw PCA/heatmap dendrograms on DEGs"
Clustering Clustering
updated 10.5 years ago by ★ 1.6k • written 10.5 years ago by ▴ 200
0
votes
4
replies
1.1k
views
Adding chips to an existing set of normalised data
Clustering probe Clustering probe
updated 21.0 years ago by ▴ 220 • written 21.0 years ago by ★ 1.1k
0
votes
3
replies
1.8k
views
Clustering in R
Microarray Normalization Clustering Microarray Normalization Clustering
updated 19.9 years ago by ★ 3.4k • written 19.9 years ago by ▴ 10
0
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4
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6.0k
views
Heatmap without using clustering result
Clustering Mfuzz Clustering Mfuzz
updated 15.2 years ago by ▴ 60 • written 15.2 years ago by ▴ 430
2
votes
4
replies
3.0k
views
Your thoughts on Limma Array Weights?
Clustering limma Clustering limma
updated 15.9 years ago by 50k • written 15.9 years ago by ▴ 970
0
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2
replies
1.0k
views
Common microarray clustering method
Microarray Clustering Microarray Clustering
updated 19.4 years ago by ▴ 110 • written 19.5 years ago by ▴ 20
0
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4
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2.7k
views
How to get and save normalized data from limma
Clustering limma Clustering limma
15.7 years ago Wang, Jixin ▴ 130
0
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2
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2.6k
views
Batch effect in limma
Clustering Clustering
updated 14.7 years ago by 66k • written 14.7 years ago by ▴ 240
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2
replies
1.2k
views
clustering of genes
Transcription Clustering Cancer Transcription Clustering Cancer
updated 21.0 years ago by ★ 13k • written 21.0 years ago by 50k
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2
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1.2k
views
Hierarchical clustering and shrinking centroids...
Classification Clustering pamr Classification Clustering pamr
updated 20.0 years ago by ★ 1.0k • written 20.0 years ago by ▴ 180
0
votes
2
replies
6.8k
views
hierarchical clustering - spearman correlation
Clustering Clustering
updated 19.6 years ago by ★ 13k • written 19.6 years ago by ▴ 130
0
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4
replies
980
views
limma: get all sig genes from multiple contrasts
Clustering limma Clustering limma
updated 18.0 years ago by ▴ 270 • written 18.0 years ago by ▴ 60
0
votes
3
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1.6k
views
Correlation works, but dist() runs out of memory
Clustering Cancer Clustering Cancer
updated 17.2 years ago by 21k • written 17.2 years ago by ★ 1.9k
0
votes
3
replies
1.7k
views
Timeseries loop design analysis using Limma or Maanova?
Bayesian Clustering TimeCourse timecourse oligo Bayesian Clustering TimeCourse timecourse
18.3 years ago Pete ▴ 70
0
votes
2
replies
1.4k
views
splitting clusters and cluster significance
Clustering Clustering
20.7 years ago Subramanian Karthikeyan ▴ 60
0
votes
2
replies
2.2k
views
: Clustering with Diana
Clustering Clustering
updated 19.4 years ago by ▴ 140 • written 19.4 years ago by ▴ 500
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votes
3
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1.4k
views
Clustering and gene modules
Genetics Clustering Cancer goCluster Genetics Clustering Cancer goCluster
updated 19.4 years ago by 21k • written 19.4 years ago by ▴ 40
0
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4
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1.1k
views
lumiHumanAll.db, GOstats
Clustering GOstats Clustering GOstats
updated 15.9 years ago by ★ 3.6k • written 16.0 years ago by ▴ 270
50 results • Page 1 of 1
Recent ...
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Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue by shepherl 3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Comment: How to arrange multiple plots into one page in NOISeq? by baptiste.bidon • 0
After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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