Bioconductor Covariate

Showing : Covariate • reset

votes

replies

6.5k

views

limma covariate continuous categorical adjustment

updated 8.8 years ago by Gordon Smyth 50k • written 8.8 years ago by sg45653 • 0

votes

replies

5.2k

views

limma spline design and contrast matrix covariate

updated 8.8 years ago by Aaron Lun ★ 28k • written 8.8 years ago by Hilary ▴ 30

votes

replies

3.1k

views

limma covariate block paired samples technical replicates

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by eleonoregravier ▴ 70

votes

replies

4.7k

views

limma reference group covariate

9.4 years ago alakatos ▴ 130

votes

replies

1.5k

views

limma paired covariate

updated 8.0 years ago by Steve Lianoglou ★ 13k • written 8.0 years ago by meeta.mistry ▴ 30

votes

replies

2.0k

views

limma voom batcheffect covariate

updated 7.0 years ago by Gordon Smyth 50k • written 7.0 years ago by raf4 ▴ 20

votes

replies

1.1k

views

limma covariate

updated 5.1 years ago by Gordon Smyth 50k • written 5.1 years ago by scheran02 • 0

votes

replies

4.7k

views

covariate deseqdataset Deseq2 multiple factor design

updated 8.8 years ago by Michael Love 42k • written 8.8 years ago by Lillyhchen ▴ 10

votes

replies

2.5k

views

edger differential expression covariate batch effect glm

updated 8.4 years ago by Gordon Smyth 50k • written 8.4 years ago by aec ▴ 90

votes

replies

2.5k

views

limma pre/post continous covariate

8.4 years ago • updated 8.3 years ago Smeeta Shrestha ▴ 20

vote

replies

851

views

deseq2 DEG covariate study design variables

updated 4.2 years ago by Michael Love 42k • written 4.2 years ago by Yonatan Amzaleg • 0

votes

replies

1.4k

views

limma methylation R covariate MDS

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by RC • 0

votes

replies

3.6k

views

edger contrast covariate glmlrt()

7.1 years ago Jeff Skinner • 0

votes

replies

1.2k

views

DEG deseq2 Covariate

updated 5.0 years ago by Michael Love 42k • written 5.0 years ago by sum732 • 0

votes

replies

5.0k

views

RNA rnaseq Covariate adjustment deseq

updated 8.2 years ago by Michael Love 42k • written 8.2 years ago by sjs0282 • 0

15 results • Page 1 of 1

Recent ...

Replies

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0

The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Awards • All

Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180