Bioconductor CyToF

Showing : CyToF • reset

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1.1k

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cytofWorkflow cytof diffcyt

5.0 years ago achaillon • 0

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1.9k

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Cytofast FlowSom CyTOF fcs files

5.2 years ago domenico.somma • 0

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1.6k

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deseq2 mass cytometry CyTOF

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by mikhael.manurung ▴ 280

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984

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batch effect cytof

5.7 years ago mikhael.manurung ▴ 280

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2.5k

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Cydar CyTOF normalization

updated 6.3 years ago by Aaron Lun ★ 29k • written 6.3 years ago by ghogg • 0

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1.5k

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cydar CyTOF

updated 6.8 years ago by Aaron Lun ★ 29k • written 6.8 years ago by mikhael.manurung ▴ 280

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1.8k

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cytofkit cytof write.csv output

updated 9.1 years ago by chen_hao ▴ 30 • written 9.1 years ago by cjackson13 • 0

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3.2k

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flowCore flowcore CyToF Rtsne

updated 10.4 years ago by Jiang, Mike ★ 1.3k • written 10.4 years ago by clevy ▴ 10

8 results • Page 1 of 1

Recent ...

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Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Popular Question to Istvan Albert ▴ 50

Popular Question to Dario Strbenac ★ 1.6k

Scholar to Nikos Ignatiadis ▴ 180