Bioconductor CyToF

Showing : CyToF • reset

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885

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cytofWorkflow cytof diffcyt

4.0 years ago achaillon • 0

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1.6k

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Cytofast FlowSom CyTOF fcs files

4.2 years ago domenico.somma • 0

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1.3k

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deseq2 mass cytometry CyTOF

updated 4.2 years ago by Michael Love 43k • written 4.2 years ago by mikhael.manurung ▴ 280

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774

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batch effect cytof

4.8 years ago mikhael.manurung ▴ 280

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2.0k

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Cydar CyTOF normalization

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by ghogg • 0

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1.1k

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cydar CyTOF

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by mikhael.manurung ▴ 280

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1.5k

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cytofkit cytof write.csv output

updated 8.1 years ago by chen_hao ▴ 30 • written 8.1 years ago by cjackson13 • 0

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3.0k

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flowCore flowcore CyToF Rtsne

updated 9.4 years ago by Jiang, Mike ★ 1.3k • written 9.4 years ago by clevy ▴ 10

8 results • Page 1 of 1

Recent ...

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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