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CyToF
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859
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flow cytometry differential expression through time
cytofWorkflow
cytof
diffcyt
3.9 years ago
achaillon
• 0
0
votes
0
replies
1.6k
views
Error from FlowSom to Cytofast
Cytofast
FlowSom
CyTOF
fcs files
4.1 years ago
domenico.somma
• 0
1
vote
5
replies
1.3k
views
CyTOF Differential Abundance Analysis using DESeq2
deseq2
mass cytometry
CyTOF
updated 4.1 years ago by
Michael Love
42k • written 4.1 years ago by
mikhael.manurung
▴ 280
0
votes
0
replies
756
views
Concatenating different runs from the same pool of barcoded CyTOF samples
batch effect
cytof
4.7 years ago
mikhael.manurung
▴ 280
1
vote
6
replies
1.9k
views
Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
Cydar
CyTOF
normalization
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
ghogg
• 0
2
votes
4
replies
1.1k
views
Cydar's countCells tolerance parameter for arcsinh-transformed data
cydar
CyTOF
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
mikhael.manurung
▴ 280
2
votes
2
replies
1.5k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 8.0 years ago by
chen_hao
▴ 30 • written 8.0 years ago by
cjackson13
• 0
1
vote
2
replies
2.9k
views
Errors when reading CyToF flowSet into flowCore
flowCore
flowcore
CyToF
Rtsne
updated 9.3 years ago by
Jiang, Mike
★ 1.3k • written 9.3 years ago by
clevy
▴ 10
8 results • Page
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Comment: [How to construct a model.matrix ]
by
kyj2226
• 0
Thanks to you, I learn a lot. Many thanks, Yujin.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
rania.alanany
• 0
thank you for your advice, I posted separate post.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
Robert Castelo
★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results
by
ATpoint
★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ]
by
Gordon Smyth
51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Votes
Answer: [How to construct a model.matrix ]
C: DESeq2 baseMean values for each sample
C: DESeq2 baseMean values for each sample
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
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★ 4.5k
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