Bioconductor CyToF

Showing : CyToF • reset

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1.1k

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cytofWorkflow cytof diffcyt

4.9 years ago achaillon • 0

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1.9k

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Cytofast FlowSom CyTOF fcs files

5.1 years ago domenico.somma • 0

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1.6k

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deseq2 mass cytometry CyTOF

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by mikhael.manurung ▴ 280

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948

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batch effect cytof

5.6 years ago mikhael.manurung ▴ 280

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2.4k

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Cydar CyTOF normalization

updated 6.1 years ago by Aaron Lun ★ 29k • written 6.1 years ago by ghogg • 0

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1.5k

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cydar CyTOF

updated 6.7 years ago by Aaron Lun ★ 29k • written 6.7 years ago by mikhael.manurung ▴ 280

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1.7k

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cytofkit cytof write.csv output

updated 9.0 years ago by chen_hao ▴ 30 • written 9.0 years ago by cjackson13 • 0

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3.2k

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flowCore flowcore CyToF Rtsne

updated 10.2 years ago by Jiang, Mike ★ 1.3k • written 10.2 years ago by clevy ▴ 10

8 results • Page 1 of 1

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Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k

I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…

Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0

Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…

Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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Popular Question to Fred Hutch (Recruiting) ▴ 40