Showing : CyToF • reset
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flow cytometry differential expression through time
cytofWorkflow cytof diffcyt
4.9 years ago achaillon • 0
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Error from FlowSom to Cytofast
Cytofast FlowSom CyTOF fcs files
5.1 years ago domenico.somma • 0
1
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5
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1.6k
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CyTOF Differential Abundance Analysis using DESeq2
deseq2 mass cytometry CyTOF
updated 5.1 years ago by 43k • written 5.1 years ago by ▴ 280
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Concatenating different runs from the same pool of barcoded CyTOF samples
batch effect cytof
5.7 years ago mikhael.manurung ▴ 280
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6
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Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
Cydar CyTOF normalization
updated 6.2 years ago by ★ 29k • written 6.2 years ago by • 0
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4
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Cydar's countCells tolerance parameter for arcsinh-transformed data
cydar CyTOF
updated 6.7 years ago by ★ 29k • written 6.7 years ago by ▴ 280
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2
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1.7k
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Cytofkit - Trouble with writing files after performing the analysis
cytofkit cytof write.csv output
updated 9.1 years ago by ▴ 30 • written 9.1 years ago by • 0
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Errors when reading CyToF flowSet into flowCore
flowCore flowcore CyToF Rtsne
updated 10.3 years ago by ★ 1.3k • written 10.3 years ago by ▴ 10
8 results • Page 1 of 1
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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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