Bioconductor DGELIst

Showing : DGELIst • reset

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134

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DGEList edgeR

17 days ago • updated 16 days ago prity6459 • 0

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616

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edgeR Bioconductor Dseq2 dgelist

updated 16 months ago by Gordon Smyth 50k • written 16 months ago by Fiona • 0

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838

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factors edgeR setup DGELIst

updated 3.0 years ago by Gordon Smyth 50k • written 3.0 years ago by Alex • 0

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1.7k

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edger DGElist

updated 5.1 years ago by Gordon Smyth 50k • written 5.1 years ago by naser.sadri • 0

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1.7k

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dgelist edger RnaSeqGeneEdgeRQL

updated 5.8 years ago by Gordon Smyth 50k • written 5.8 years ago by Kevin • 0

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2.0k

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edgeR summarizedexperiment dgelist

6.1 years ago aljoscha.leusmann • 0

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925

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tree bootstrap dgelist plotmds

6.2 years ago Larry K. • 0

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2.2k

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edger dgelist NA egsea

updated 6.2 years ago by Gordon Smyth 50k • written 6.2 years ago by belmore • 0

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3.6k

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edger DGEList org.hs.eg.db gene annotation

updated 2.6 years ago by IIart.hubII • 0 • written 6.4 years ago by svlachavas ▴ 830

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3.0k

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egder dgelist group rnaseq

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by fawazfebin ▴ 60

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3.2k

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DGElist filter edgeR

updated 6.8 years ago by Gordon Smyth 50k • written 6.8 years ago by alakatos ▴ 130

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2.5k

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edger raw reads TMM normalised values DGEList differential gene expression

updated 7.7 years ago by Steve Lianoglou ★ 13k • written 7.7 years ago by benedict.ng ▴ 20

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6.6k

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edger subsetting dgelist

updated 7.8 years ago by Gordon Smyth 50k • written 7.8 years ago by mnaymik ▴ 10

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20k

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edgeR row.names DGEList

9.2 years ago ccheung • 0

14 results • Page 1 of 1

Recent ...

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Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k