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Showing :
DGElist
•
reset
1
vote
4
replies
20k
views
edgeR: non-unique values when setting 'row.names' - but the row names are unique!!!
edgeR
row.names
DGEList
9.3 years ago
ccheung
• 0
3
votes
7
replies
6.7k
views
edgeR subsetting DGEList by column/sample
edger
subsetting
dgelist
updated 7.8 years ago by
Gordon Smyth
50k • written 7.8 years ago by
mnaymik
▴ 10
2
votes
4
replies
3.2k
views
Filtering DGEList object in edgeR
DGElist
filter
edgeR
updated 6.9 years ago by
Gordon Smyth
50k • written 6.9 years ago by
alakatos
▴ 130
2
votes
2
replies
629
views
Inccorect group number in DGEList
edgeR
Bioconductor
Dseq2
dgelist
updated 17 months ago by
Gordon Smyth
50k • written 17 months ago by
Fiona
• 0
1
vote
4
replies
2.1k
views
edgeR/DGEList add assays to a DGEList like in SummarizedExperiment
edgeR
summarizedexperiment
dgelist
6.1 years ago
aljoscha.leusmann
• 0
0
votes
2
replies
3.0k
views
Design of 'group' object in DGElist function
egder
dgelist
group
rnaseq
updated 6.5 years ago by
Aaron Lun
★ 28k • written 6.5 years ago by
fawazfebin
▴ 60
0
votes
1
reply
2.2k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger
dgelist
NA
egsea
updated 6.2 years ago by
Gordon Smyth
50k • written 6.2 years ago by
belmore
• 0
3
votes
3
replies
3.6k
views
Correct annotation of DGEList object from edgeR package regarding an RNA-Seq dataset
edger
DGEList
org.hs.eg.db
gene annotation
updated 2.6 years ago by
IIart.hubII
• 0 • written 6.5 years ago by
svlachavas
▴ 830
3
votes
6
replies
2.5k
views
How to carry out differential gene expression starting with a table of TMM normalised values without access to the raw reads?
edger
raw reads
TMM normalised values
DGEList
differential gene expression
updated 7.8 years ago by
Steve Lianoglou
★ 13k • written 7.8 years ago by
benedict.ng
▴ 20
0
votes
4
replies
1.7k
views
Error in RnaSeqGeneEdgeRQL
dgelist
edger
RnaSeqGeneEdgeRQL
updated 5.8 years ago by
Gordon Smyth
50k • written 5.8 years ago by
Kevin
• 0
0
votes
2
replies
1.7k
views
create DGElist Object
edger
DGElist
updated 5.1 years ago by
Gordon Smyth
50k • written 5.1 years ago by
naser.sadri
• 0
1
vote
1
reply
848
views
Optimal edgeR design for a single-factor experiment
factors
edgeR
setup
DGELIst
updated 3.0 years ago by
Gordon Smyth
50k • written 3.0 years ago by
Alex
• 0
0
votes
2
replies
144
views
How to make DGEList and design matrix by edgeR package
DGEList
edgeR
26 days ago
prity6459
• 0
0
votes
0
replies
930
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
6.2 years ago
Larry K.
• 0
14 results • Page
1 of 1
Recent ...
Replies
Comment: error running enricher from clusterprofiler
by
Yael
• 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file
by
Yun
• 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization?
by
Daniel
• 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…
Votes
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
Answer: SGSeq: moving toward diffex from SGSeq analysis
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