Showing : DiffBind • reset
0
votes
0
replies
108
views
Diffbind: Cut&Run: E-coli spike-in
Normalization DiffBind
16 days ago kim • 0
0
votes
0
replies
96
views
diffbind covariates
DiffBind ATACSeq
updated 24 days ago by 42k • written 25 days ago by ▴ 220
0
votes
2
replies
419
views
DiffBind dba.report discrepancy
DiffBind
4 weeks ago • updated 28 days ago aelbassiouny • 0
0
votes
0
replies
84
views
DiffBind subset replicates
DiffBind
5 weeks ago Haiping • 0
0
votes
0
replies
134
views
Background normalization of Diffbind dba.normalize
Normalization DiffBind
6 weeks ago Young Boqin • 0
0
votes
0
replies
197
views
Trying to understand basic DiffBind usage
ChIPSeq DiffBind
9 weeks ago Alejandro • 0
0
votes
2
replies
336
views
DiffBind for MBD-seq
MBD-seq DiffBind
12 weeks ago Marianna ▴ 20
0
votes
0
replies
226
views
DiffBind - observation that the default union overlap is actually a gap of 1 bp
DiffBind
3 months ago Ian D. ▴ 70
0
votes
1
reply
264
views
DiffBind remove Unplace Chromosome (chrUn)
DiffBind
3 months ago mdidish ▴ 10
0
votes
0
replies
218
views
DiffBind dba.plotprofile y-axis range
DiffBind
3 months ago Tara • 0
0
votes
8
replies
693
views
DiffBind full library size not reliable
DiffBind Reads MACS2 FullLibSize
updated 3 months ago by ★ 5.2k • written 3 months ago by ▴ 20
1
vote
3
replies
441
views
Create merged ChIP heatmap across conditions
DiffBind profileplyr
updated 4 months ago by ★ 5.2k • written 4 months ago by • 0
0
votes
0
replies
338
views
Blacklist regions on DBA object (diffbind)
DiffBind chipseq
4 months ago gamma.jian ▴ 10
0
votes
2
replies
409
views
Trouble reading samplesheet in with diffbind to create dba
DiffBind DifferentialPeakCalling
5 months ago Mallory • 0
0
votes
0
replies
238
views
Difference in Contrast in DiffBind
DiffBind
6 months ago user_bioinfo • 0
0
votes
0
replies
278
views
need help with Diffbind multiple groups
DiffBind ChIPSeqData
6 months ago Dinesh • 0
0
votes
1
reply
508
views
dba.plotProfile() plotting and interpretation
DiffBind
updated 15 days ago by • 0 • written 6 months ago by ▴ 10
0
votes
0
replies
335
views
DiffBind: no peaks in DBA object
DiffBind macs2 chipseq
6 months ago yvonneh • 0
0
votes
0
replies
271
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
6 months ago Ian D. ▴ 70
0
votes
9
replies
1.2k
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
6 months ago • updated 4 weeks ago Ian D. ▴ 70
1
vote
1
reply
423
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind ChIPSeqData DESeq2
updated 6 months ago by 42k • written 6 months ago by • 0
0
votes
1
reply
675
views
ATACseq merge peaks
DiffBind
updated 6 months ago by ★ 4.5k • written 7 months ago by • 0
0
votes
4
replies
539
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind DESeq2 ATACSeq
7 months ago lonn • 0
0
votes
0
replies
262
views
Diffbind Error in socketConnection
DiffBind Errorinsocketconnection SpikeIn
7 months ago Virangika • 0
2
votes
2
replies
571
views
[DiffBind] Obtaining normalization factors
DiffBind
7 months ago Henry ▴ 10
2
votes
2
replies
896
views
[Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Blacklist/Greylist
DiffBind Normalization
7 months ago Henry ▴ 10
0
votes
0
replies
363
views
How to extract the coordinate of dba.plotPCA?
DiffBind PCA
7 months ago feather-W • 0
0
votes
0
replies
355
views
PCA plot for normalized counts using Diffbind
DiffBind PCAplot
7 months ago Ankit ▴ 20
0
votes
0
replies
324
views
DIFFBIND : beginner questions, sex, multiple phenotypes, etc...
DiffBind ATACSeq
7 months ago Pierre Lindenbaum ▴ 10
0
votes
0
replies
349
views
Multifactor analysis in DiffBind
DiffBind multifactoranalysis
8 months ago erbrocato • 0
0
votes
2
replies
592
views
Scores used for DiffBind's dba.plotHeatmap
DiffBind
8 months ago Sam ▴ 10
0
votes
1
reply
436
views
Exact same results in Diffbind with different normalization methods
DiffBind
8 months ago red_bricks ▴ 60
0
votes
1
reply
572
views
Extracting binding matrix with raw counts from DiffBind in ATAC-seq data not working
DiffBind ATACSeq
10 months ago isaromero8888 • 0
0
votes
0
replies
579
views
Which normalization should I do use for ATAC Seq using DiffBind
DiffBind edgeR ATACSeq DESeq2
10 months ago Jawahar • 0
0
votes
0
replies
352
views
Parameter bSubControl with no effect in DiffBind dba.count?
bSubControl ChIPSeq DiffBind
10 months ago frueher • 0
0
votes
0
replies
319
views
Errror in running EdgeR based differential analysis in diffbind
DiffBind
10 months ago Aswathy • 0
0
votes
0
replies
483
views
Differential Binding of CUT&Tag peaks with normalization using scaling factor
DiffBind CUT&Tag
10 months ago Hai • 0
0
votes
0
replies
435
views
ATACseq- Counts around TSS plot
DiffBind ATACSeq
10 months ago inna.gur • 0
0
votes
1
reply
1.2k
views
DiffBind; Error: No sites have activity greater than filter value
DiffBind
updated 10 months ago by • 0 • written 15 months ago by • 0
0
votes
2
replies
606
views
In DiffBind, dba.blacklist changes the minOverlap parameter
DiffBind
written 11 months ago by ▴ 10
1
vote
2
replies
535
views
Inconsistent results in DiffBind
DiffBind
11 months ago Sam ▴ 10
1
vote
1
reply
584
views
DiffBind getting Fold values of near 0
DiffBind DESeq2
updated 11 months ago by ★ 4.5k • written 11 months ago by • 0
0
votes
0
replies
613
views
Calculation of ChIP-seq normalization factors with non-conventional spike-in assumptions
csaw ChIPseq DiffBind
12 months ago jared.andrews07 ▴ 30
0
votes
0
replies
621
views
DiffBind dba.count() crash/can't finish problems
dba.count DiffBind ATACSeq
updated 13 months ago by 67k • written 13 months ago by • 0
2
votes
4
replies
1.5k
views
DiffBind returns different grey lists every time I run dba.blacklist even if I set seed.
DiffBind
updated 13 months ago by ▴ 10 • written 13 months ago by • 0
2
votes
2
replies
655
views
DiffBind dba.analyze function doesn't have bSubControl option anymore?
DiffBind
13 months ago r.murakami • 0
1
vote
1
reply
751
views
DiffBind - how to prep the sample matrix when multiple bam files are used by MACS2's -t and -c param?
DiffBind chipseq
updated 13 months ago by 67k • written 13 months ago by • 0
3
votes
7
replies
1.3k
views
Genes in open chromatin region
ChIPpeakAnno DiffBind
written 14 months ago by ▴ 20
0
votes
3
replies
890
views
diffbind analyze for wheat
DiffBind
updated 8 months ago by • 0 • written 14 months ago by • 0
0
votes
1
reply
811
views
Samples have been merged or lost during counting. Check for duplicate bam files. DiffBind dbacount
DiffBind
15 months ago Mark • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
Awards • All
Popular Question to Fred Hutch (Recruiting) ▴ 40
Scholar to Gordon Smyth 51k
Popular Question to chase.mateusiak • 0
Scholar to James W. MacDonald 67k
Popular Question to JennyS • 0
Locations • All
WEHI, Melbourne, Australia, 20 minutes ago
France, 33 minutes ago
United States, 1 hour ago
The city by the bay, 1 hour ago
United States, 4 hours ago
Traffic: 493 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6