Bioconductor EPICv2

Showing : EPICv2 • reset

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EPICv2 EPICv2manifest

8 months ago Joshua Llano • 0

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EpicV2 ChAMPdata

updated 13 months ago by icecreamlover • 0 • written 14 months ago by nurkenber • 0

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ChAMP EPICv2

updated 13 months ago by Ricky • 0 • written 2.4 years ago by medha.suman • 0

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456

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EpicV2 DMRcate

14 months ago kitzhu • 0

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sesame EPICv2manifest epicv2

updated 4 months ago by MargaretJDinan • 0 • written 17 months ago by luca.s ▴ 50

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sesameData EPICv2 EPICv1

updated 6 months ago by Mancy • 0 • written 18 months ago by archibold.mposhi • 0

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limma DMRcate MethylationArray EPICV2

updated 18 months ago by Gordon Smyth 53k • written 19 months ago by Kim • 0

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DNAMethylation GO MethylationArray missMethyl EPICv2

21 months ago • updated 14 months ago s.malik • 0

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2.4k

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 21 months ago by James W. MacDonald 68k • written 21 months ago by rae.alshammari ▴ 20

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ChAMP EPICv2

updated 13 months ago by icecreamlover • 0 • written 23 months ago by ChunkyJones • 0

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2.3k

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sesame IlluminaHumanMethylationEPICv2anno.20a1.hg38 methylationEPICv2.0 EpicV2

updated 20 months ago by aldea85 • 0 • written 2.1 years ago by Courtney ▴ 10

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minfiDataEPIC EpicV2

updated 2.2 years ago by Zuguang Gu ▴ 290 • written 2.3 years ago by Izabela.ams ▴ 10

12 results • Page 1 of 1

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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to James W. MacDonald 68k