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EPICv2
•
reset
1
vote
2
replies
1.4k
views
CpGs with genomic positions greater than the chromosome size in EPICv2?
EPICv2
EPICv2manifest
9 months ago
Joshua Llano
• 0
2
votes
7
replies
4.4k
views
Annotation for EPICv2
EpicV2
ChAMPdata
updated 14 months ago by
icecreamlover
• 0 • written 15 months ago by
nurkenber
• 0
1
vote
9
replies
3.8k
views
Error using champ.import
ChAMP
EPICv2
updated 14 months ago by
Ricky
• 0 • written 2.5 years ago by
medha.suman
• 0
0
votes
0
replies
478
views
DMRcate pcutoff setting
EpicV2
DMRcate
15 months ago
kitzhu
• 0
1
vote
4
replies
2.5k
views
SeSAMe DMR for EPIC V2
sesame
EPICv2manifest
epicv2
updated 5 months ago by
MargaretJDinan
• 0 • written 18 months ago by
luca.s
▴ 50
0
votes
4
replies
2.5k
views
Combining analysis of EPICv1 and EPICv2 using SeSAMe package
sesameData
EPICv2
EPICv1
updated 7 months ago by
Mancy
• 0 • written 19 months ago by
archibold.mposhi
• 0
3
votes
2
replies
1.2k
views
limma Intercept vs No-intercept models completely changing DMR results?
limma
DMRcate
MethylationArray
EPICV2
updated 19 months ago by
Gordon Smyth
53k • written 20 months ago by
Kim
• 0
1
vote
3
replies
2.2k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
22 months ago • updated 15 months ago
s.malik
• 0
0
votes
4
replies
2.6k
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 22 months ago by
James W. MacDonald
68k • written 23 months ago by
rae.alshammari
▴ 20
0
votes
4
replies
3.7k
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP
EPICv2
updated 14 months ago by
icecreamlover
• 0 • written 2.0 years ago by
ChunkyJones
• 0
3
votes
5
replies
2.4k
views
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
sesame
IlluminaHumanMethylationEPICv2anno.20a1.hg38
methylationEPICv2.0
EpicV2
updated 21 months ago by
aldea85
• 0 • written 2.2 years ago by
Courtney
▴ 10
1
vote
6
replies
3.4k
views
annotation EpicV2
minfiDataEPIC
EpicV2
updated 2.3 years ago by
Zuguang Gu
▴ 290 • written 2.4 years ago by
Izabela.ams
▴ 10
12 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Votes
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
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