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EPICv2
•
reset
1
vote
2
replies
1.4k
views
CpGs with genomic positions greater than the chromosome size in EPICv2?
EPICv2
EPICv2manifest
9 months ago • updated 8 months ago
Joshua Llano
• 0
2
votes
7
replies
4.1k
views
Annotation for EPICv2
EpicV2
ChAMPdata
updated 13 months ago by
icecreamlover
• 0 • written 14 months ago by
nurkenber
• 0
1
vote
9
replies
3.8k
views
Error using champ.import
ChAMP
EPICv2
updated 14 months ago by
Ricky
• 0 • written 2.5 years ago by
medha.suman
• 0
0
votes
0
replies
463
views
DMRcate pcutoff setting
EpicV2
DMRcate
14 months ago
kitzhu
• 0
1
vote
4
replies
2.4k
views
SeSAMe DMR for EPIC V2
sesame
EPICv2manifest
epicv2
updated 5 months ago by
MargaretJDinan
• 0 • written 18 months ago by
luca.s
▴ 50
0
votes
4
replies
2.4k
views
Combining analysis of EPICv1 and EPICv2 using SeSAMe package
sesameData
EPICv2
EPICv1
updated 6 months ago by
Mancy
• 0 • written 18 months ago by
archibold.mposhi
• 0
3
votes
2
replies
1.1k
views
limma Intercept vs No-intercept models completely changing DMR results?
limma
DMRcate
MethylationArray
EPICV2
updated 18 months ago by
Gordon Smyth
53k • written 19 months ago by
Kim
• 0
1
vote
3
replies
2.2k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
21 months ago • updated 15 months ago
s.malik
• 0
0
votes
4
replies
2.5k
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 22 months ago by
James W. MacDonald
68k • written 22 months ago by
rae.alshammari
▴ 20
0
votes
4
replies
3.6k
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP
EPICv2
updated 13 months ago by
icecreamlover
• 0 • written 23 months ago by
ChunkyJones
• 0
3
votes
5
replies
2.3k
views
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
sesame
IlluminaHumanMethylationEPICv2anno.20a1.hg38
methylationEPICv2.0
EpicV2
updated 21 months ago by
aldea85
• 0 • written 2.1 years ago by
Courtney
▴ 10
1
vote
6
replies
3.4k
views
annotation EpicV2
minfiDataEPIC
EpicV2
updated 2.2 years ago by
Zuguang Gu
▴ 290 • written 2.3 years ago by
Izabela.ams
▴ 10
12 results • Page
1 of 1
Recent ...
Replies
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Answer: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…
Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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