Bioconductor EPICv2

Showing : EPICv2 • reset

vote

replies

1.2k

views

EPICv2 EPICv2manifest

5 weeks ago • updated 29 days ago Joshua Llano • 0

votes

replies

3.1k

views

EpicV2 ChAMPdata

updated 5 months ago by icecreamlover • 0 • written 6 months ago by nurkenber • 0

vote

replies

3.5k

views

ChAMP EPICv2

updated 6 months ago by Ricky • 0 • written 22 months ago by medha.suman • 0

votes

replies

305

views

EpicV2 DMRcate

6 months ago kitzhu • 0

vote

replies

1.6k

views

sesame EPICv2manifest epicv2

10 months ago luca.s ▴ 50

votes

replies

1.1k

views

sesameData EPICv2 EPICv1

updated 6 months ago by zhouwanding ▴ 20 • written 10 months ago by archibold.mposhi • 0

votes

replies

923

views

limma DMRcate MethylationArray EPICV2

updated 11 months ago by Gordon Smyth 52k • written 11 months ago by Kim • 0

vote

replies

1.9k

views

DNAMethylation GO MethylationArray missMethyl EPICv2

13 months ago • updated 7 months ago s.malik • 0

votes

replies

1.9k

views

DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 14 months ago by James W. MacDonald 68k • written 14 months ago by rae.alshammari ▴ 20

votes

replies

3.0k

views

ChAMP EPICv2

updated 5 months ago by icecreamlover • 0 • written 15 months ago by ChunkyJones • 0

votes

replies

1.8k

views

sesame IlluminaHumanMethylationEPICv2anno.20a1.hg38 methylationEPICv2.0 EpicV2

updated 13 months ago by aldea85 • 0 • written 17 months ago by Courtney ▴ 10

vote

replies

3.0k

views

minfiDataEPIC EpicV2

updated 19 months ago by Zuguang Gu ▴ 290 • written 20 months ago by Izabela.ams ▴ 10

12 results • Page 1 of 1

Recent ...

Replies

Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0

`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/

Comment: error in ChAMP loading file by janwilseo • 0

Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…

Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0

One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…

Comment: DESeq2 Design controlling for gender by donnycrimson • 0

On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…

Votes

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

A: Unbalanced experiment with multiple samples from each patient.

Awards • All