Showing : EPICv2 • reset
2
votes
7
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1.4k
views
Annotation for EPICv2
EpicV2 ChAMPdata
updated 7 weeks ago by • 0 • written 11 weeks ago by • 0
1
vote
9
replies
3.0k
views
Error using champ.import
ChAMP EPICv2
updated 10 weeks ago by • 0 • written 18 months ago by • 0
0
votes
0
replies
183
views
DMRcate pcutoff setting
EpicV2 DMRcate
11 weeks ago kitzhu • 0
1
vote
3
replies
1.0k
views
SeSAMe DMR for EPIC V2
sesame EPICv2manifest epicv2
6 months ago luca.s ▴ 50
0
votes
2
replies
645
views
Combining analysis of EPICv1 and EPICv2 using SeSAMe package
sesameData EPICv2 EPICv1
updated 11 weeks ago by ▴ 20 • written 6 months ago by • 0
3
votes
2
replies
794
views
limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 7 months ago by 52k • written 8 months ago by • 0
1
vote
3
replies
1.5k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation GO MethylationArray missMethyl EPICv2
10 months ago • updated 3 months ago s.malik • 0
0
votes
4
replies
1.4k
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest
updated 10 months ago by 67k • written 10 months ago by ▴ 10
0
votes
4
replies
2.2k
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP EPICv2
updated 7 weeks ago by • 0 • written 11 months ago by • 0
2
votes
5
replies
1.5k
views
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
sesame IlluminaHumanMethylationEPICv2anno.20a1.hg38 methylationEPICv2.0 EpicV2
updated 9 months ago by • 0 • written 13 months ago by • 0
0
votes
6
replies
2.6k
views
annotation EpicV2
minfiDataEPIC EpicV2
updated 15 months ago by ▴ 290 • written 16 months ago by • 0
11 results • Page 1 of 1
Recent ...
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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