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ExperimentHub
•
reset
2
votes
2
replies
1.9k
views
ExperimentHub full metadata
ExperimentHub
written 4 months ago by
igor
▴ 50
3
votes
3
replies
596
views
AnnotationHub/ExperimentHub resources backup
AnnotationHub
HubPub
ExperimentHub
updated 5 months ago by
James W. MacDonald
68k • written 5 months ago by
igor
▴ 50
0
votes
5
replies
2.0k
views
Cannot connect to annotationhub server
AnnotationHub
ExperimentHub
updated 16 months ago by
shepherl
4.2k • written 16 months ago by
Mishaal Irfan
• 0
0
votes
0
replies
615
views
News:
AnnotationHub and ExperimentHub Access Downtime
AnnotationHub
ExperimentHub
16 months ago
shepherl
4.2k
1
vote
1
reply
678
views
Documenting resources in an `ExperimentHub` package?
AnnotationHub
ExperimentHub
updated 17 months ago by
James W. MacDonald
68k • written 17 months ago by
Tim Barry
• 0
6
votes
12
replies
8.5k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
2.0 years ago • updated 18 months ago
shepherl
4.2k
0
votes
4
replies
794
views
Storing directories inside an ExperimentHub package?
ExperimentHub
18 months ago
Tim Barry
• 0
1
vote
5
replies
3.9k
views
Cannot connect to ExperimentHub server
ExperimentHub
updated 18 months ago by
Jiayu
• 0 • written 23 months ago by
yanling
• 0
0
votes
1
reply
1.5k
views
scRNAseq package and cell type annotations
ExperimentHub
R
ExperimentHubData
scRNAseq
SingleR
updated 2.6 years ago by
Peter Hickey
▴ 760 • written 2.6 years ago by
cathalgking
▴ 10
0
votes
3
replies
1.2k
views
Can I create my own, private ExperimentHub instance?
ExperimentHub
3.3 years ago • updated 3.2 years ago
sandmann.t
▴ 70
0
votes
1
reply
1.6k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
4.6 years ago
shepherl
4.2k
8
votes
33
replies
5.7k
views
Unable to download hg19.generanges as part of DMRcatedata package
DMRacte
DMRcateranges
ExperimentHub
hg19.generanges
updated 4.8 years ago by
friedmanhiccc
▴ 10 • written 5.1 years ago by
richardallenfriedmanbrooklyn
▴ 30
8
votes
16
replies
9.4k
views
Cannot connect to ExperimentHub server
ExperimentHub
AnnotationHub
SingleR
updated 5.2 years ago by
shepherl
4.2k • written 5.2 years ago by
enricoferrero
▴ 680
2
votes
2
replies
1.1k
views
ExperimentHub downloading files to home directory (~)
ExperimentHub
updated 6.6 years ago by
shepherl
4.2k • written 6.6 years ago by
story.benjamin
▴ 20
4
votes
10
replies
2.6k
views
Can't access devel version of ExperimentHub in Travis CI
experimenthub
continuous-integration
7.1 years ago
Kyle Johnsen
▴ 30
1
vote
1
reply
1.1k
views
What is the function of the 'make-metadata.R' script when making a ExperimentHub package?
experimenthub
updated 7.2 years ago by
shepherl
4.2k • written 7.2 years ago by
Kyle Johnsen
▴ 30
0
votes
7
replies
3.2k
views
ExperimentHub wackiness (which breaks packages that depend upon experimentHub-provided *data pkgs)
experimenthub
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
Tim Triche
★ 4.2k
5
votes
4
replies
2.0k
views
Eliminating repetitive calls to ExperimentHub
experimenthub
annotationhub
large dataset
7.5 years ago
slinker
▴ 20
5
votes
2
replies
2.5k
views
Setting ExperimentHub Cache Location
experimenthub
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
Mike Smith
★ 6.6k
5
votes
11
replies
3.8k
views
Certificate problem with ExperimentHub / AnnotationHub
software error
curatedmetagenomicdata
annotationhub
experimenthub
updated 8.9 years ago by
Levi Waldron
★ 1.1k • written 8.9 years ago by
morganx
▴ 10
5
votes
3
replies
2.0k
views
ExperimentHub()[["EH359"]] has character expression values
ExperimentHub
curatedMetagenomicData
updated 8.9 years ago by
Lucas Schiffer
▴ 240 • written 9.0 years ago by
Wolfgang Huber
★ 13k
2
votes
1
reply
1.6k
views
ExperimentHub - Error: database is corrupt
ExperimentHub
9.0 years ago
francois.collin
• 0
4
votes
7
replies
2.3k
views
AnnotationHub and ExperimentHub make "~" directory in my home
annotationhub
experimenthub
updated 9.2 years ago by
Valerie Obenchain
★ 6.8k • written 9.2 years ago by
Michael Love
43k
0
votes
2
replies
1.9k
views
Getting "error: database is corrupt" when using ExperimentHub()
experimenthub
gse62944
updated 9.3 years ago by
Valerie Obenchain
★ 6.8k • written 9.3 years ago by
shinx558
• 0
24 results • Page
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Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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