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Showing :
ExperimentHub
•
reset
2
votes
2
replies
1.9k
views
ExperimentHub full metadata
ExperimentHub
written 5 months ago by
igor
▴ 50
3
votes
3
replies
652
views
AnnotationHub/ExperimentHub resources backup
AnnotationHub
HubPub
ExperimentHub
updated 7 months ago by
James W. MacDonald
68k • written 7 months ago by
igor
▴ 50
0
votes
5
replies
2.2k
views
Cannot connect to annotationhub server
AnnotationHub
ExperimentHub
updated 18 months ago by
shepherl
4.2k • written 18 months ago by
Mishaal Irfan
• 0
0
votes
0
replies
682
views
News:
AnnotationHub and ExperimentHub Access Downtime
AnnotationHub
ExperimentHub
18 months ago
shepherl
4.2k
1
vote
1
reply
711
views
Documenting resources in an `ExperimentHub` package?
AnnotationHub
ExperimentHub
updated 19 months ago by
James W. MacDonald
68k • written 19 months ago by
Tim Barry
• 0
6
votes
12
replies
8.6k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
2.2 years ago • updated 20 months ago
shepherl
4.2k
0
votes
4
replies
857
views
Storing directories inside an ExperimentHub package?
ExperimentHub
20 months ago
Tim Barry
• 0
1
vote
5
replies
4.0k
views
Cannot connect to ExperimentHub server
ExperimentHub
updated 19 months ago by
Jiayu
• 0 • written 2.1 years ago by
yanling
• 0
0
votes
1
reply
1.6k
views
scRNAseq package and cell type annotations
ExperimentHub
R
ExperimentHubData
scRNAseq
SingleR
updated 2.8 years ago by
Peter Hickey
▴ 760 • written 2.8 years ago by
cathalgking
▴ 10
0
votes
3
replies
1.2k
views
Can I create my own, private ExperimentHub instance?
ExperimentHub
3.4 years ago • updated 3.3 years ago
sandmann.t
▴ 70
0
votes
1
reply
1.7k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
4.7 years ago
shepherl
4.2k
8
votes
33
replies
5.9k
views
Unable to download hg19.generanges as part of DMRcatedata package
DMRacte
DMRcateranges
ExperimentHub
hg19.generanges
updated 5.0 years ago by
friedmanhiccc
▴ 10 • written 5.3 years ago by
richardallenfriedmanbrooklyn
▴ 30
8
votes
16
replies
9.6k
views
Cannot connect to ExperimentHub server
ExperimentHub
AnnotationHub
SingleR
updated 5.4 years ago by
shepherl
4.2k • written 5.4 years ago by
enricoferrero
▴ 680
2
votes
2
replies
1.2k
views
ExperimentHub downloading files to home directory (~)
ExperimentHub
updated 6.7 years ago by
shepherl
4.2k • written 6.7 years ago by
story.benjamin
▴ 20
4
votes
10
replies
2.7k
views
Can't access devel version of ExperimentHub in Travis CI
experimenthub
continuous-integration
7.2 years ago
Kyle Johnsen
▴ 30
1
vote
1
reply
1.1k
views
What is the function of the 'make-metadata.R' script when making a ExperimentHub package?
experimenthub
updated 7.3 years ago by
shepherl
4.2k • written 7.3 years ago by
Kyle Johnsen
▴ 30
0
votes
7
replies
3.3k
views
ExperimentHub wackiness (which breaks packages that depend upon experimentHub-provided *data pkgs)
experimenthub
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
Tim Triche
★ 4.2k
5
votes
4
replies
2.0k
views
Eliminating repetitive calls to ExperimentHub
experimenthub
annotationhub
large dataset
7.6 years ago
slinker
▴ 20
5
votes
2
replies
2.6k
views
Setting ExperimentHub Cache Location
experimenthub
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
Mike Smith
★ 6.6k
5
votes
11
replies
4.0k
views
Certificate problem with ExperimentHub / AnnotationHub
software error
curatedmetagenomicdata
annotationhub
experimenthub
updated 9.0 years ago by
Levi Waldron
★ 1.1k • written 9.0 years ago by
morganx
▴ 10
5
votes
3
replies
2.1k
views
ExperimentHub()[["EH359"]] has character expression values
ExperimentHub
curatedMetagenomicData
updated 9.0 years ago by
Lucas Schiffer
▴ 240 • written 9.1 years ago by
Wolfgang Huber
★ 13k
2
votes
1
reply
1.6k
views
ExperimentHub - Error: database is corrupt
ExperimentHub
9.1 years ago
francois.collin
• 0
4
votes
7
replies
2.4k
views
AnnotationHub and ExperimentHub make "~" directory in my home
annotationhub
experimenthub
updated 9.3 years ago by
Valerie Obenchain
★ 6.8k • written 9.3 years ago by
Michael Love
43k
0
votes
2
replies
1.9k
views
Getting "error: database is corrupt" when using ExperimentHub()
experimenthub
gse62944
updated 9.5 years ago by
Valerie Obenchain
★ 6.8k • written 9.5 years ago by
shinx558
• 0
24 results • Page
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Replies
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Answer: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…
Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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