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Answer: Dominance Index for Shotgun Metagenomics Data
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1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
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For help with interpretation and design of analysis, I recommend working with a local statistician.
Due to time restrictions, I can only…
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Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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