Showing : ExpressionData • reset
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PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
2.8 years ago Clara • 0
0
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2
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1.6k
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R: Confused about Limma R package output being LogFC or Log2FC
limma R ExpressionData
updated 14 months ago by 50k • written 15 months ago by • 0
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1.2k
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How to display or output expression data with non-unique feature labels?
Annotation ExpressionData Annotation ExpressionData
16.8 years ago Martin Morgan 25k
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1.2k
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
3.3 years ago jol.espinoz ▴ 40
3
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2
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1.1k
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NChannelSet --> eSet/expressionSet ? How to transform?
ExpressionData ArrayExpress
updated 3.0 years ago by 50k • written 3.0 years ago by • 0
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0
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1.1k
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How to display or output expression data with non-unique feature labels?
ExpressionData ExpressionData
16.8 years ago Kocherginsky, Masha [BSD] - HSD ▴ 10
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3
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948
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DESeq analysis with Biological replicate.
DESeq2 ExpressionData GeneExpression
updated 3.2 years ago by 41k • written 3.2 years ago by • 0
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3
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878
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Error in loading data set
ExpressionData
updated 2.2 years ago by ▴ 760 • written 2.2 years ago by • 0
1
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0
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820
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nested design with random factor and limma???
ExpressionData limma ExpressionData limma
15.8 years ago Bettina Kulle Andreassen ▴ 20
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811
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nested design with random factor and limma???
ExpressionData limma ExpressionData limma
15.8 years ago Gordon Smyth 50k
2
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804
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Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression DESeq2 ExpressionData
updated 2.1 years ago by • 0 • written 2.1 years ago by ▴ 10
0
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3
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781
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expression data
ExpressionData ExpressionNormalizationWorkflow
updated 19 months ago by 65k • written 19 months ago by • 0
0
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1
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686
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Function createExpressionSet: Creating an ExpressionSet - Which package needed?
ExpressionData
updated 3.3 years ago by 41k • written 3.3 years ago by ▴ 40
0
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1
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620
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HSMMSingleCell metadata
ExperimentHubData ExpressionData CellDataSet RNASeqData
2.1 years ago karl.stamm ▴ 10
0
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2
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558
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Doubt about expression data as well as assay
GEOquery ExpressionData assay SummarizedExperiment ExpressionAtlas
updated 12 months ago by • 0 • written 12 months ago by • 0
0
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528
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edgeR testing interactions between two factors while controlling for blocking factor
edgeR ExpressionData RNASeqData
2.0 years ago Mafalda • 0
3
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2
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527
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please resolve the issue
gene ExpressionData
updated 13 months ago by 65k • written 13 months ago by • 0
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0
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517
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Gene expression changes in one condition
RNASeq Gene ExpressionData
2.4 years ago AZ ▴ 30
0
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1
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337
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Time change in expression vs time change in phenotype
Transcriptomics ExpressionData DESeq2
updated 12 months ago by 41k • written 12 months ago by • 0
19 results • Page 1 of 1
Recent ...
Replies
Comment: DEG with low counts by Rajat • 0
Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…
Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k
To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…
Answer: flowStats Search Error by shepherl 3.8k
We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.
Comment: How to correct for known and surrogate variables in DESeq2? by nhaus ▴ 30
Hey Crystal, did you end up getting advice? I am facing the exact same questions that you are having right now. Would be very grateful if y…
Votes
Answer: Light difference when using coef vs omit a group when compare 3 groups.
C: Add new columns to DESeqResults from text file by matching rownames.
Answer: geneList error in clusterprofiler
Comment: Memory errors using read.bismark?
Comment: Not fully paired differential gene expression analysis
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