Showing : ExpressionData • reset
1
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2
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R: Confused about Limma R package output being LogFC or Log2FC
limma R ExpressionData
updated 3.0 years ago by 53k • written 3.1 years ago by • 0
0
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2
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2.5k
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PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
4.6 years ago Clara ▴ 10
0
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0
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1.9k
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
5.1 years ago jol.espinoz ▴ 40
3
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2
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1.8k
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NChannelSet --> eSet/expressionSet ? How to transform?
ExpressionData ArrayExpress
updated 4.8 years ago by 53k • written 4.8 years ago by • 0
0
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0
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1.6k
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How to display or output expression data with non-unique feature labels?
Annotation ExpressionData Annotation ExpressionData
18.6 years ago Martin Morgan 25k
1
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3
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1.5k
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DESeq analysis with Biological replicate.
DESeq2 ExpressionData GeneExpression
updated 5.0 years ago by 43k • written 5.0 years ago by • 0
0
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0
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1.4k
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How to display or output expression data with non-unique feature labels?
ExpressionData ExpressionData
18.6 years ago Kocherginsky, Masha [BSD] - HSD ▴ 10
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3
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1.4k
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Error in loading data set
ExpressionData
updated 4.0 years ago by ▴ 780 • written 4.0 years ago by • 0
3
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2
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1.3k
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Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
NanoStringNCTools limma ExpressionData RNASeq edgeR
20 months ago mohammedtoufiq91 ▴ 10
2
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2
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1.3k
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Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression DESeq2 ExpressionData
updated 3.9 years ago by • 0 • written 3.9 years ago by ▴ 10
0
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3
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1.3k
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expression data
ExpressionData ExpressionNormalizationWorkflow
updated 3.4 years ago by 68k • written 3.4 years ago by • 0
0
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1
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1.2k
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HSMMSingleCell metadata
ExperimentHubData ExpressionData CellDataSet RNASeqData
3.9 years ago karl.stamm ▴ 10
0
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2
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1.2k
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Doubt about expression data as well as assay
GEOquery ExpressionData assay SummarizedExperiment ExpressionAtlas
updated 2.9 years ago by • 0 • written 2.9 years ago by • 0
0
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1
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1.1k
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Function createExpressionSet: Creating an ExpressionSet - Which package needed?
ExpressionData
updated 5.2 years ago by 43k • written 5.2 years ago by ▴ 50
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0
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1.1k
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nested design with random factor and limma???
ExpressionData limma ExpressionData limma
17.6 years ago Gordon Smyth 53k
1
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0
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1.1k
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nested design with random factor and limma???
ExpressionData limma ExpressionData limma
17.6 years ago Bettina Kulle Andreassen ▴ 20
3
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2
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1.0k
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please resolve the issue
gene ExpressionData
updated 2.9 years ago by 68k • written 2.9 years ago by • 0
0
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0
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886
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edgeR testing interactions between two factors while controlling for blocking factor
edgeR ExpressionData RNASeqData
3.9 years ago Mafalda • 0
0
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0
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867
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Gene expression changes in one condition
RNASeq Gene ExpressionData
4.2 years ago AZ ▴ 20
0
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1
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781
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Time change in expression vs time change in phenotype
Transcriptomics ExpressionData DESeq2
updated 2.8 years ago by 43k • written 2.8 years ago by • 0
20 results • Page 1 of 1
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Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Comment: DiffBind plot.profile error by a2sahaaaq2c • 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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