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FCS
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3
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3.3k
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Modifying or writing a FCS file in R using the FlowCore package
FCS
flowframe
flowcore
flow cytometry
5.6 years ago
vonskopnik
▴ 10
3
votes
1
reply
2.0k
views
Convert Flowframe to matrix
flowcore
fcs
flow cytommetry
matrix
conversion
updated 4.9 years ago by
Jake Wagner
▴ 310 • written 4.9 years ago by
apurva
• 0
3
votes
3
replies
2.5k
views
flowcore: z-Score normalization of flowSet (fsApply or normalize)
flowcore
fcs
normalization
flowstats
updated 8.8 years ago by
Jiang, Mike
★ 1.3k • written 8.8 years ago by
BenAbflack
• 0
1
vote
1
reply
2.0k
views
Loading FCS files
FCS
flow cytometry
bioconductor
phenoData
Loading Data
updated 7.3 years ago by
SamGG
▴ 350 • written 7.3 years ago by
smajor
• 0
0
votes
0
replies
1.1k
views
How to load additional data from fcs files
fcs
concentration
experimentdata
7.0 years ago
jurg.spaak
• 0
0
votes
0
replies
1.0k
views
Trimming FCS files doesn't decrease size
FCS
8.7 years ago
Nick England
• 0
0
votes
3
replies
1.3k
views
Loop for mass analyses and extraction of FCS data
Exprs
Lapply
FCS
for loop
flowcore
updated 6.5 years ago by
Jiang, Mike
★ 1.3k • written 6.5 years ago by
Wilson Yeo
• 0
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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