Bioconductor FoldChange

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StatisticalMethod FoldChange edgeR RNASeq

16 months ago Sabiha ▴ 20

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5.0k

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FoldChange DiffBind lfcShrink

updated 21 months ago by Rory Stark ★ 5.2k • written 21 months ago by bhandary.8590 ▴ 20

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1.4k

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FoldChange DiffBind lfcShrink Cut&TagData

22 months ago bhandary.8590 ▴ 20

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2.1k

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DESeq2 TPM Foldchange

updated 3.1 years ago by Michael Love 43k • written 3.1 years ago by dadca596 • 0

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1.2k

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edgeR RNA-Seq log2 foldchange q_value

updated 3.3 years ago by Gordon Smyth 52k • written 3.3 years ago by johndavidgriner74 • 0

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1.6k

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sign FoldChange DESeq2 reference

updated 3.3 years ago by Michael Love 43k • written 3.3 years ago by yampolsk • 0

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7.1k

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DifferentialExpression DEA FC FoldChange edgeR

3.6 years ago zhxiaokang ▴ 20

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3.0k

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EdgeR RNAseq Foldchange

updated 3.8 years ago by swbarnes2 ★ 1.4k • written 3.8 years ago by najib • 0

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4.1k

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foldchange topGO DifferentialExpression enrichment

updated 4.5 years ago by Gordon Smyth 52k • written 4.5 years ago by lessismore ▴ 20

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1.8k

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limma microarray foldchange DEG GEO

updated 5.2 years ago by Gordon Smyth 52k • written 5.2 years ago by Pietro ▴ 40

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1.7k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 6.0 years ago by Michael Love 43k • written 6.3 years ago by fiona.dick91 ▴ 60

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1.7k

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limma RNAseq foldchange

6.2 years ago • updated 6.1 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

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Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0

[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…

Comment: Filtering after DESeq by caroline.zanchi • 0

I am going to try this right now, thanks !

Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0

This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/

Comment: Filtering after DESeq by ATpoint ★ 4.8k

The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …

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A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

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